Transcript 7909 | MetamORF

Transcript

ID CARD

MetamORF ID

7909

ENST00000529772

Name

CARS-214

Strand

Biotype

protein_coding

Start-end positions

3000930-3057402

CDS Start-stop positions

3001188-3054940

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

HGNC:1493

Aliases

CARS,
CARS1, ENSG00000110619, HGNC:1493,
NCBI:833, OFF:CARS

Chr 11

ORFs

65 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
282327	30	GTG ...	VGR ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, LCL, RPE-1
1208160	69	GTG ...	VGQ ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293T
2310252	57	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1511612	135	GTG ...	VRS ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
1730947	108	GTG ...	VGS ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2688565	171	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	RPE-1
1722624	81	TTG ...	LTP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
293204	186	CTG ...	LCS ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, LCL, MDA-MB-231
1511617	66	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
7908	81	ATG ...	MTM ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1722628	90	GTG ...	VTM ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
293193	174	CTG ...	LFL ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HeLa, LCL, MDA-MB-231, RPE-1
1730967	159	CTG ...	LDP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, RPE-1
1511614	42	TTG ...	LEI ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa
915860	93	AGA ...	RFC ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1722634	57	GTG ...	VEG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2688563	168	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	RPE-1
1730965	114	GTG ...	VCS ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1
2310247	30	TTG ...	LQA ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1722644	48	TTG ...	LKT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
293208	210	TTG ...	LPQ ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, hES, LCL, MDA-MB-231
1298495	87	CTG ...	LGP ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T, MDA-MB-231, RPE-1
903459	33	AGT ...	SAE ...	Ribo-seq	AGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1722640	87	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1730944	210	ATG ...	MPP ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1722626	84	ATG ...	MLT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
293196	51	CTG ...	LRP ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, LCL
293210	270	ATG ...	MRP ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231
2310255	96	CTG ...	LAY ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
282331	42	CTG ...	LVS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
406613	39	GAA ...	EYL ...	Ribo-seq	GAA	moderate	2	sORFs_org_Human	Alternative Downstream sORF	HCT116, Jurkat
526732	33	CTG ...	LQM ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, HAP1, HeLa, RPE-1, U2OS
1511621	105	TTG ...	LIQ ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
1511625	120	ATG ...	MGL ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, MDA-MB-231
903455	114	GAG ...	EGK ...	Ribo-seq	GAG	strong	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
526736	132	CTG ...	LPT ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
903449	63	GAG ...	EAQ ...	Ribo-seq	GAG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	Jurkat
1722630	123	ATG ...	MTR ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
293206	195	TTG ...	LRK ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
526734	78	CTG ...	LKK ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1730938	96	CTG ...	LRF ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2688561	165	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	RPE-1
2310230	54	GTG ...	VRC ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
282335	54	CTG ...	LLT ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
1511623	114	CTG ...	LST ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
526738	63	TTG ...	LKR ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, U2OS
1722646	84	GTG ...	VLG ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1818912	45	TTG ...	LCS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
293191	45	TTG ...	LGC ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
1511606	81	TTG ...	LKR ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
1818914	33	TTG ...	LWT ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1298492	54	ATG ...	MTH ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T
1722638	42	CTG ...	LQN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
282337	30	ATG ...	MTM ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, LCL
1511610	111	TTG ...	LPY ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
1511627	129	ATG ...	MSP ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, MDA-MB-231
1730962	90	CTG ...	LLG ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1
903453	90	CAA ...	QAK ...	Ribo-seq	CAA	strong	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
282333	51	TTG ...	LTS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
1722642	90	CTG ...	LLG ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
282329	33	TTG ...	LRS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
2326385	75	ATG ...	MPC ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
1208157	114	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, MDA-MB-231
1730941	117	TTG ...	LPE ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1511619	90	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231

Export data