Transcript 749 | MetamORF

Transcript

ID CARD

MetamORF ID

749

ENST00000491735

Name

IDI1-205

Strand

Biotype

processed_transcript

Start-end positions

1040903-1049103

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

HGNC:5387

Aliases

ENSG00000067064,
HGNC:5387, IDI1, NCBI:3422,
OFF:IDI1

Chr 10

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
94428	222	GTG ...	VRK ...	Ribo-seq	GTG	weak	22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1
190160	138	CTG ...	LKK ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	ncRNA sORF	HEK293
94424	57	TTG ...	LLC ...	Ribo-seq	TTG	weak	22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
94432	33	GTG ...	VNM ...	Ribo-seq	GTG	moderate	19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1814934	36	CTG ...	LDM ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	ncRNA sORF	HeLa
94430	228	TTG ...	LLV ...	Ribo-seq	TTG	moderate	21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1
892866	273	GCT ...	AQS ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
190165	204	TTG ...	LNP ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1
2542809	234	CTG ...	LRG ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES, MM1S
281917	210	GTG ...	VGG ...	Ribo-seq	GTG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S
892868	300	AAT ...	NYL ...	Ribo-seq	AAT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
892859	201	AAT ...	NPD ...	Ribo-seq	AAT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
94426	42	ATG ...	MRL ...	Ribo-seq	ATG	weak	16	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
1814936	63	TTG ...	LYH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	ncRNA sORF	HeLa
100495	189	CTG ...	LCS ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S
1814930	36	CTG ...	LFL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	ncRNA sORF	HeLa
892856	45	AAA ...	KGR ...	Ribo-seq	AAA	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
94434	45	ATG ...	MVS ...	Ribo-seq	ATG	moderate	20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
748	150	CTG ...	LWP ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1
406223	138	GCT ...	ADQ ...	Ribo-seq	GCT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1814932	30	ATG ...	MCS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
94436	48	CTG ...	LMV ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
1814928	36	GTG ...	VRD ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
403869	198	CCA ...	PDP ...	Ribo-seq	CCA	strong	1	sORFs_org_Human	ncRNA sORF	HCT116
892863	252	GGT ...	GEH ...	Ribo-seq	GGT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
403867	168	TAT ...	YVS ...	Ribo-seq	TAT	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
190168	225	TTG ...	LVR ...	Ribo-seq	TTG	moderate	21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1
190162	165	GTG ...	VSK ...	Ribo-seq	GTG	weak	9	sORFs_org_Human	ncRNA sORF	Brain, HEK293, HeLa, hES, HFF
892861	30	GAA ...	ECN ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat

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