Transcript 674 | MetamORF

Transcript

ID CARD

MetamORF ID

674

ENST00000476468

Name

NOLC1-205

Strand

Biotype

protein_coding

Start-end positions

102152413-102159938

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:15608

Aliases

ENSG00000166197,
HGNC:15608, KIAA0035, NCBI:9221,
NOLC1, NOPP130, NOPP140,
OFF:NOLC1, P130

Chr 10

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
678	120	GTG ...	VLG ...	Ribo-seq	GTG		30	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
680	108	CTG ...	LRD ...	Ribo-seq	CTG		29	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
900384	90	TCA ...	SEV ...	Ribo-seq	TCA		1	sORFs_org_Human	sORF	Jurkat
900388	75	AAG ...	KFA ...	Ribo-seq	AAG		1	sORFs_org_Human	sORF	Jurkat
405759	129	TAT ...	YPL ...	Ribo-seq	TAT		2	sORFs_org_Human	sORF	HCT116, Jurkat
676	132	CTG ...	LYP ...	Ribo-seq	CTG		30	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
900386	81	GCC ...	ANK ...	Ribo-seq	GCC		1	sORFs_org_Human	sORF	Jurkat
900382	111	TTC ...	FLR ...	Ribo-seq	TTC		3	sORFs_org_Human	sORF	HeLa, Jurkat, THP-1
682	84	GTG ...	VAN ...	Ribo-seq	GTG		22	sORFs_org_Human	sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
673	147	GTG ...	VVP ...	Ribo-seq	GTG		30	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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