Transcript 66 | MetamORF

Transcript

ID CARD

MetamORF ID

ENST00000224862

Name

FBXL15-201

Strand

Biotype

protein_coding

Start-end positions

102419814-102423136

CDS Start-stop positions

102421130-102422993

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

HGNC:28155

Aliases

ENSG00000107872,
Fbl15, FBXL15, FBXO37,
HGNC:28155, MGC11279, NCBI:79176,
OFF:FBXL15

Chr 10

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
934651	129	ATG ...	MPR ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1
2302358	75	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
480808	42	ATG ...	MPT ...	Ribo-seq	ATG	weak	8	sORFs_org_Human Johnstone2016	sORF Upstream	Brain_tumor, HEK293, HEK293T, HeLa, HFF, RPE-1
3300499	903	ATG ...	MEP ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1817158	48	CTG ...	LCG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2302362	165	GTG ...	VSR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
65	30	GTG ...	VWR ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HeLa, MM1S, RPE-1
1313748	75	CTG ...	LAQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	sORF Upstream	HEK293, HeLa
1134298	45	CTG ...	LMP ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	sORF Upstream	HEK293, HeLa, RPE-1
1817156	42	CTG ...	LPI ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1817162	33	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1817153	51	CTG ...	LTR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream Overlapping sORF	HeLa
1817149	39	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1313752	90	ATG ...	MLH ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
2302364	156	ATG ...	MAV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1817160	30	GTG ...	VWL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
898518	45	CGC ...	RCG ...	Ribo-seq	CGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1817151	96	TTG ...	LST ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa

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