Transcript 658 | MetamORF

Transcript

ID CARD

MetamORF ID

658

ENST00000462391

Name

NPM3-202

Strand

Biotype

processed_transcript

Start-end positions

101781589-101783375

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

HGNC:7931

Aliases

ENSG00000107833,
HGNC:7931, NCBI:10360, NPM3,
OFF:NPM3

Chr 10

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1296161	42	GTG ...	VSS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	ncRNA sORF	Blood, HEK293T, MDA-MB-231
2301964	78	GTG ...	VMR ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
898339	96	GTT ...	VFE ...	Ribo-seq	GTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
2301966	111	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
900358	213	TGT ...	CEL ...	Ribo-seq	TGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
660	147	GTG ...	VLA ...	Ribo-seq	GTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, RPE-1, THP-1, U2OS
898337	111	TGT ...	CEL ...	Ribo-seq	TGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
405755	156	GCG ...	AEH ...	Ribo-seq	GCG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
405757	162	GAT ...	DDA ...	Ribo-seq	GAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
898335	84	TTC ...	FTF ...	Ribo-seq	TTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1438410	42	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa
1129134	117	ATG ...	MFL ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
1296163	96	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293T
657	144	CTG ...	LAL ...	Ribo-seq	CTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, RPE-1, THP-1, U2OS
1438412	45	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HeLa
1129136	120	ATG ...	MMF ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
98407	108	TTG ...	LSQ ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, RPE-1, U2OS

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