Transcript 6557 | MetamORF

Transcript

ID CARD

MetamORF ID

6557

ENST00000533597

Name

ACAT1-210

Strand

Biotype

retained_intron

Start-end positions

108146121-108147588

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

HGNC:93

Aliases

ACAT,
ACAT1, ENSG00000075239, HGNC:93,
NCBI:38, OFF:ACAT1, THIL

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6571	45	TTG ...	LPV ...	Ribo-seq	TTG	moderate	12	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
6563	69	TTG ...	LEI ...	Ribo-seq	TTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2905040	72	CTG ...	LYF ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
912901	87	CAT ...	HAL ...	Ribo-seq	CAT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
1207234	30	ATG ...	MEE ...	Ribo-seq	ATG	strong	9	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
6559	144	TTG ...	LKK ...	Ribo-seq	TTG		31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
912904	72	GGA ...	GEY ...	Ribo-seq	GGA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
912899	213	GAT ...	DVW ...	Ribo-seq	GAT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
912889	156	AAA ...	KDV ...	Ribo-seq	AAA		1	sORFs_org_Human	Intronic sORF	Jurkat
6565	48	GTG ...	VNI ...	Ribo-seq	GTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
912895	39	AAT ...	NGG ...	Ribo-seq	AAT		1	sORFs_org_Human	Intronic sORF	Jurkat
1823642	141	TTG ...	LQW ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
6561	96	CTG ...	LVV ...	Ribo-seq	CTG		31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
6556	150	GTG ...	VGL ...	Ribo-seq	GTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
912893	54	CAA ...	QKV ...	Ribo-seq	CAA		1	sORFs_org_Human	Intronic sORF	Jurkat
408882	54	AGT ...	SIC ...	Ribo-seq	AGT	moderate	3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
636840	42	ATG ...	MEE ...	Ribo-seq	ATG		11	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, RPE-1, THP-1
636842	33	CTG ...	LFL ...	Ribo-seq	CTG		9	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
912897	54	AGC ...	SCF ...	Ribo-seq	AGC		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
6569	81	TTG ...	LKQ ...	Ribo-seq	TTG	moderate	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
912891	78	ATT ...	IKM ...	Ribo-seq	ATT		1	sORFs_org_Human	Intronic sORF	Jurkat
6567	93	TTG ...	LTH ...	Ribo-seq	TTG	weak	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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