Transcript 6542 | MetamORF

Transcript

ID CARD

MetamORF ID

6542

ENST00000533610

Name

ACAT1-211

Strand

Biotype

retained_intron

Start-end positions

108140025-108144147

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAT ...

Genome browsers

UCSC

Gene

HGNC:93

Aliases

ACAT,
ACAT1, ENSG00000075239, HGNC:93,
NCBI:38, OFF:ACAT1, THIL

Chr 11

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1138417	30	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Intronic sORF	MDA-MB-231
3200893	90	GTA ...	VVV ...	Ribo-seq	GTA		1	sORFs_org_Human	Intronic sORF	HEK293
912883	72	TGC ...	CSG ...	Ribo-seq	TGC		1	sORFs_org_Human	Intronic sORF	Jurkat
1009242	48	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	guo_2014
103876	30	ATG ...	MME ...	Ribo-seq	ATG	weak	9	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1, THP-1
290313	45	ATG ...	MKN ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, hES, LCL, MDA-MB-231
912885	60	CAT ...	HDG ...	Ribo-seq	CAT		1	sORFs_org_Human	Intronic sORF	Jurkat
6548	45	CTG ...	LGN ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, MDA-MB-231
6552	84	GTG ...	VKE ...	Ribo-seq	GTG		30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1728761	30	ATG ...	MKL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Intronic sORF	Blood, MDA-MB-231
103878	96	CTG ...	LVL ...	Ribo-seq	CTG		22	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
1207222	42	ATG ...	MQR ...	Ribo-seq	ATG	weak	8	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
6541	111	TTG ...	LHE ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, MDA-MB-231, RPE-1
1728759	36	TTG ...	LEM ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Intronic sORF	Blood, MDA-MB-231
408880	78	GAA ...	EDE ...	Ribo-seq	GAA		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
1131456	42	TTG ...	LIF ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Intronic sORF	MDA-MB-231
912881	33	AGT ...	SNS ...	Ribo-seq	AGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
912887	30	TGT ...	CYT ...	Ribo-seq	TGT		1	sORFs_org_Human	Intronic sORF	Jurkat
6546	87	ATG ...	MLL ...	Ribo-seq	ATG	weak	7	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, MDA-MB-231, RPE-1
6554	33	CTG ...	LKT ...	Ribo-seq	CTG		27	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
912879	48	GAC ...	DSF ...	Ribo-seq	GAC		1	sORFs_org_Human	Intronic sORF	Jurkat
6550	87	GTG ...	VVK ...	Ribo-seq	GTG		30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
6544	102	ATG ...	MNR ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, MDA-MB-231, RPE-1
1138412	30	GTG ...	VLI ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, hES, MDA-MB-231
912876	93	GAT ...	DVV ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
103867	243	CTG ...	LNI ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, guo_2014, HEK293
103873	117	CTG ...	LND ...	Ribo-seq	CTG		28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS

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