Transcript 630 | MetamORF

Transcript

ID CARD

MetamORF ID

630

ENST00000360803

Name

GTPBP4-202

Strand

Biotype

protein_coding

Start-end positions

988019-1019936

CDS Start-stop positions

988480-1017227

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

HGNC:21535

Aliases

CRFG,
ENSG00000107937, FLJ10686, FLJ10690,
GTPBP4, HGNC:21535, NCBI:23560,
NGB, NOG1, OFF:GTPBP4

Chr 10

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
405741	249	AGG ...	RDP ...	Ribo-seq	AGG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
644	36	GTG ...	VTF ...	Ribo-seq	GTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
900346	99	AGC ...	SGK ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
640	72	CTG ...	LWP ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
1814905	45	TTG ...	LAQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
272539	135	CTG ...	LGR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream Overlapping sORF	LCL
1669	45	TTG ...	LLG ...	Ribo-seq	TTG		20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
1665	81	ATG ...	MSS ...	Ribo-seq	ATG		19	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
629	75	CTG ...	LRK ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, HFF, LCL, MDA-MB-231
405749	33	ACG ...	TFL ...	Ribo-seq	ACG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
94375	33	ATG ...	MAT ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
902032	135	CGA ...	RLS ...	Ribo-seq	CGA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
480143	84	ATG ...	MTV ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
405747	57	GGA ...	GVA ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
900287	30	GAC ...	DLS ...	Ribo-seq	GAC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1658	120	CTG ...	LQT ...	Ribo-seq	CTG		11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
900350	39	CAC ...	HVT ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
281760	75	TTG ...	LIR ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
1667	69	ATG ...	MRS ...	Ribo-seq	ATG		19	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
902010	45	ACT ...	TSR ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
902039	60	GCA ...	AEF ...	Ribo-seq	GCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
405739	276	TTC ...	FWS ...	Ribo-seq	TTC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
902037	69	GAG ...	EAE ...	Ribo-seq	GAG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1671	42	TTG ...	LGT ...	Ribo-seq	TTG		20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1
634	180	TTG ...	LVL ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
279323	186	GTG ...	VNP ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
281752	84	GTG ...	VHS ...	Ribo-seq	GTG		14	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
190149	39	ATG ...	MIR ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1814907	45	CTG ...	LGA ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
902029	159	TTA ...	LCA ...	Ribo-seq	TTA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
633095	33	ATG ...	MLG ...	Ribo-seq	ATG		13	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
632	228	CTG ...	LLR ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1093876	45	GTG ...	VGT ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, MDA-MB-231, MM1S
281717	66	CTG ...	LPA ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
902027	42	GCA ...	ANK ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
642	60	GTG ...	VGV ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
99338	66	GTG ...	VLL ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
638	87	CTG ...	LLP ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
633097	30	TTG ...	LGS ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
902042	96	ATT ...	IYP ...	Ribo-seq	ATT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
636	177	GTG ...	VLT ...	Ribo-seq	GTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
3297997	1905	ATG ...	MAH ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
900348	90	ACT ...	TLL ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat

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