Transcript 615 | MetamORF

Transcript

ID CARD

MetamORF ID

615

ENST00000611517

Name

TMEM222-211

Strand

Biotype

protein_coding

Start-end positions

27322145-27336399

CDS Start-stop positions

27322198-27335466

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

HGNC:25363

Aliases

C1orf160,
DKFZP564D0478, ENSG00000186501, HGNC:25363,
NCBI:84065, OFF:TMEM222, TMEM222

Chr 1

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
881813	78	ACG ...	TPL ...	Ribo-seq	ACG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
508837	114	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231, MM1S, RPE-1, U2OS
897953	33	CGC ...	RMG ...	Ribo-seq	CGC	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
614	33	CTG ...	LEV ...	Ribo-seq	CTG	strong	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
406168	174	CGA ...	RDG ...	Ribo-seq	CGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
282068	30	ATG ...	MGH ...	Ribo-seq	ATG	moderate	16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
897930	78	CCA ...	PSS ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
897951	42	CGG ...	RAQ ...	Ribo-seq	CGG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
508786	177	GTG ...	VDA ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
881816	183	CTC ...	LAR ...	Ribo-seq	CTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
508839	105	CTG ...	LPA ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, hES, MDA-MB-231, MM1S, RPE-1, U2OS
508821	117	ATG ...	MLA ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, Jurkat, MDA-MB-231, RPE-1, U2OS
508835	132	CTG ...	LEY ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1, U2OS
528892	57	CTG ...	LAA ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, MDA-MB-231, RPE-1, U2OS
1821040	51	GTG ...	VSG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
881790	171	GCC ...	AHP ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
881844	162	GAA ...	ESD ...	Ribo-seq	GAA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
897916	87	GCC ...	AHP ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
881784	180	GGT ...	GVD ...	Ribo-seq	GGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
528882	36	GTG ...	VTT ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
881828	171	ATT ...	IGP ...	Ribo-seq	ATT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
508819	129	CTG ...	LLR ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
897957	33	ACG ...	TPL ...	Ribo-seq	ACG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
508823	87	CTG ...	LCT ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1821035	72	CTG ...	LQF ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
282063	84	CTG ...	LLR ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
897965	249	CTC ...	LAR ...	Ribo-seq	CTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
282070	42	CTG ...	LCT ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
897910	96	GGT ...	GVD ...	Ribo-seq	GGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
508825	189	CTG ...	LPL ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231, RPE-1, U2OS
508784	186	CTG ...	LRG ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
897904	198	GCT ...	ASP ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
528875	72	ATG ...	MLA ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, Jurkat, MDA-MB-231, RPE-1, U2OS

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