Transcript 5887 | MetamORF

Transcript

ID CARD

MetamORF ID

5887

ENST00000533931

Name

CTTN-215

Strand

Biotype

nonsense_mediated_decay

Start-end positions

70429122-70435152

CDS Start-stop positions

-70433665

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

HGNC:3338

Aliases

CTTN,
EMS1, ENSG00000085733, HGNC:3338,
NCBI:2017, OFF:CTTN

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5886	105	TTG ...	LFS ...	Ribo-seq	TTG		12	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
3200757	33	AGC ...	SRR ...	Ribo-seq	AGC		1	sORFs_org_Human	NMD sORF	HEK293
5895	75	CTG ...	LCS ...	Ribo-seq	CTG		8	sORFs_org_Human	NMD sORF	BJ, HEK293, HEK293T, HeLa, HFF, RPE-1
5891	78	GTG ...	VSP ...	Ribo-seq	GTG		22	sORFs_org_Human	NMD sORF	BJ, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
5893	117	GTG ...	VPC ...	Ribo-seq	GTG		14	sORFs_org_Human	NMD sORF	BJ, Blood, HEK293, HeLa, hES, loayza_puch_2016, RPE-1, U2OS
1297833	48	ATG ...	MRS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	NMD sORF	Blood, HEK293T, HeLa, MDA-MB-231
103254	30	CTG ...	LMT ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	NMD sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
1508463	132	GTG ...	VSW ...	Ribo-seq	GTG		1	sORFs_org_Human	NMD sORF	BJ
1297831	51	ATG ...	MMR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	NMD sORF	Blood, HEK293T, HeLa, MDA-MB-231
103252	36	TTG ...	LTL ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	NMD sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231
103246	45	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Human	NMD sORF	HAP1, HEK293, HFF
408499	129	ACG ...	TMS ...	Ribo-seq	ACG		1	sORFs_org_Human	NMD sORF	HCT116
1206744	135	CTG ...	LFV ...	Ribo-seq	CTG		3	sORFs_org_Human	NMD sORF	HAP1, HFF, loayza_puch_2016
5889	84	CTG ...	LCR ...	Ribo-seq	CTG		6	sORFs_org_Human	NMD sORF	HAP1, HEK293, HeLa, HFF, loayza_puch_2016
3200755	168	TAC ...	YEN ...	Ribo-seq	TAC		1	sORFs_org_Human	NMD sORF	HEK293
3200753	105	GCC ...	ARA ...	Ribo-seq	GCC		1	sORFs_org_Human	NMD sORF	HEK293
530838	126	ATG ...	MGP ...	Ribo-seq	ATG		11	sORFs_org_Human	NMD sORF	BJ, HEK293, HeLa, hES, loayza_puch_2016, RPE-1, U2OS

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