Transcript 5865 | MetamORF

Transcript

ID CARD

MetamORF ID

5865

ENST00000415461

Name

CTTN-205

Strand

Biotype

retained_intron

Start-end positions

70407353-70420253

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:3338

Aliases

CTTN,
EMS1, ENSG00000085733, HGNC:3338,
NCBI:2017, OFF:CTTN

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5871	51	GTG ...	VAS ...	Ribo-seq	GTG		20	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1206719	129	TTG ...	LCL ...	Ribo-seq	TTG		13	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
408483	102	AGC ...	SIR ...	Ribo-seq	AGC		1	sORFs_org_Human	Intronic sORF	HCT116
530805	33	TTG ...	LVW ...	Ribo-seq	TTG		18	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1048320	75	TTG ...	LKQ ...	Ribo-seq	TTG		18	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1
530803	45	ATG ...	MEG ...	Ribo-seq	ATG		18	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1822826	150	GTG ...	VLL ...	Ribo-seq	GTG		7	sORFs_org_Human	Intronic sORF	BJ, HeLa, hES, RPE-1
530810	66	CTG ...	LLA ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
938585	111	GTG ...	VDK ...	Ribo-seq	GTG	strong	6	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293, HeLa, hES
5869	111	CTG ...	LSA ...	Ribo-seq	CTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
530796	72	GTG ...	VSE ...	Ribo-seq	GTG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
408485	228	ACC ...	TLK ...	Ribo-seq	ACC		1	sORFs_org_Human	Intronic sORF	HCT116
5867	135	GTG ...	VFE ...	Ribo-seq	GTG		14	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
408487	216	AAG ...	KEL ...	Ribo-seq	AAG		1	sORFs_org_Human	Intronic sORF	HCT116
408481	261	AAG ...	KLR ...	Ribo-seq	AAG		1	sORFs_org_Human	Intronic sORF	HCT116
1508428	144	TTG ...	LVS ...	Ribo-seq	TTG		8	sORFs_org_Human	Intronic sORF	BJ, HeLa, hES, RPE-1
1206717	141	GTG ...	VSN ...	Ribo-seq	GTG		11	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, RPE-1
530799	114	ATG ...	MSF ...	Ribo-seq	ATG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
530807	123	TTG ...	LNP ...	Ribo-seq	TTG		15	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
5864	36	GTG ...	VQG ...	Ribo-seq	GTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
530801	51	ATG ...	MAM ...	Ribo-seq	ATG		18	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1206704	33	ATG ...	MTG ...	Ribo-seq	ATG		10	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1822828	147	TTG ...	LLV ...	Ribo-seq	TTG		7	sORFs_org_Human	Intronic sORF	BJ, HeLa, hES, RPE-1
1440863	258	CTG ...	LRE ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
408479	78	AAT ...	NDV ...	Ribo-seq	AAT		1	sORFs_org_Human	Intronic sORF	HCT116
1048325	30	GTG ...	VWN ...	Ribo-seq	GTG		18	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1

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