Transcript 5797 | MetamORF

Transcript

ID CARD

MetamORF ID

5797

ENST00000526307

Name

PPP6R3-210

Strand

Biotype

retained_intron

Start-end positions

68586276-68614592

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

HGNC:1173

Aliases

C11orf23,
DKFZp781E17107, DKFZp781E2374, DKFZp781O2362,
ENSG00000110075, FLJ11058, FLJ43065,
HGNC:1173, KIAA1558, MGC125711,
MGC125712, NCBI:55291, OFF:PPP6R3,
PP6R3, PPP6R3, SAP190,
SAPL, SAPLa, SAPS3

Chr 11

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
910549	42	TAT ...	YQT ...	Ribo-seq	TAT		1	sORFs_org_Human	Intronic sORF	Jurkat
1508251	90	ATG ...	MMV ...	Ribo-seq	ATG		4	sORFs_org_Human	Intronic sORF	BJ, Blood, MDA-MB-231, RPE-1
1727326	84	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	Blood, MDA-MB-231, RPE-1
288451	60	GTG ...	VFL ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	Blood, LCL, MDA-MB-231
103172	102	TTG ...	LDS ...	Ribo-seq	TTG		19	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
288458	81	CTG ...	LKK ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1, U2OS
408395	87	TTT ...	FDD ...	Ribo-seq	TTT		1	sORFs_org_Human	Intronic sORF	HCT116
5803	93	GTG ...	VGS ...	Ribo-seq	GTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
408410	63	AGG ...	RSR ...	Ribo-seq	AGG	weak	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
288478	30	CTG ...	LEH ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1727328	78	CTG ...	LMR ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	Blood, HeLa, MDA-MB-231, RPE-1
910562	33	TTC ...	FTP ...	Ribo-seq	TTC		1	sORFs_org_Human	Intronic sORF	Jurkat
288464	132	TTG ...	LMS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Intronic sORF	BJ, Blood, hES, LCL, MDA-MB-231
5801	48	TTG ...	LNP ...	Ribo-seq	TTG	weak	10	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
288476	78	ATG ...	MSG ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	Intronic sORF	BJ, Blood, hES, LCL, MDA-MB-231
288453	51	TTG ...	LIE ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Blood, LCL, MDA-MB-231
288466	129	ATG ...	MSQ ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, hES, LCL, MDA-MB-231
408406	57	AAG ...	KTC ...	Ribo-seq	AAG	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
288471	90	CTG ...	LWD ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Intronic sORF	BJ, Blood, hES, LCL, MDA-MB-231
910576	51	TGT ...	CPN ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
5799	69	ATG ...	MEQ ...	Ribo-seq	ATG	strong	12	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
910551	30	AGA ...	RHQ ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
910553	75	CTC ...	LNT ...	Ribo-seq	CTC		1	sORFs_org_Human	Intronic sORF	Jurkat
910579	48	ATT ...	ILQ ...	Ribo-seq	ATT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
910574	138	TTT ...	FDV ...	Ribo-seq	TTT		1	sORFs_org_Human	Intronic sORF	Jurkat
910547	54	CTT ...	LLI ...	Ribo-seq	CTT		1	sORFs_org_Human	Intronic sORF	Jurkat
1822763	30	GTG ...	VRS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
288456	99	GTG ...	VRK ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
910555	120	TTT ...	FEA ...	Ribo-seq	TTT		1	sORFs_org_Human	Intronic sORF	Jurkat
288468	105	GTG ...	VLH ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Intronic sORF	BJ, Blood, hES, LCL, MDA-MB-231
1206660	135	TTG ...	LPC ...	Ribo-seq	TTG		5	sORFs_org_Human	Intronic sORF	Blood, HAP1, HeLa, MDA-MB-231, RPE-1
288474	81	CTG ...	LMS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Intronic sORF	BJ, Blood, hES, LCL, MDA-MB-231
288462	36	GTG ...	VPT ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HeLa, Jurkat, LCL, MDA-MB-231, RPE-1, U2OS
910568	45	AAC ...	NPA ...	Ribo-seq	AAC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
408401	246	ACA ...	TDS ...	Ribo-seq	ACA		1	sORFs_org_Human	Intronic sORF	HCT116
408397	72	TCT ...	SDE ...	Ribo-seq	TCT		1	sORFs_org_Human	Intronic sORF	HCT116
2318586	75	ATG ...	MRK ...	Ribo-seq	ATG		2	sORFs_org_Human	Intronic sORF	MDA-MB-231, RPE-1
408412	57	CCA ...	PTK ...	Ribo-seq	CCA		1	sORFs_org_Human	Intronic sORF	HCT116
5796	123	TTG ...	LFE ...	Ribo-seq	TTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
910565	210	GAT ...	DGA ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
910558	48	GAA ...	EKH ...	Ribo-seq	GAA		1	sORFs_org_Human	Intronic sORF	Jurkat
1508247	126	TTG ...	LKH ...	Ribo-seq	TTG		6	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, hES, MDA-MB-231, RPE-1
1508249	93	TTG ...	LMM ...	Ribo-seq	TTG		6	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, hES, MDA-MB-231, RPE-1
1508253	87	ATG ...	MVA ...	Ribo-seq	ATG		4	sORFs_org_Human	Intronic sORF	BJ, Blood, MDA-MB-231, RPE-1
408399	78	AGA ...	RYM ...	Ribo-seq	AGA		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
2957890	72	ATG ...	MGG ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	hES
408408	30	CGG ...	RCS ...	Ribo-seq	CGG	weak	1	sORFs_org_Human	Intronic sORF	HCT116
910560	57	CAT ...	HRI ...	Ribo-seq	CAT		1	sORFs_org_Human	Intronic sORF	Jurkat

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