Transcript 575 | MetamORF

Transcript

ID CARD

MetamORF ID

575

ENST00000481034

Name

GLRX3-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

130136399-130184521

CDS Start-stop positions

130136421-130179392

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

HGNC:15987

Aliases

bA500G10.4,
ENSG00000108010, GLRX3, GLRX4,
GRX3, GRX4, HGNC:15987,
NCBI:10539, OFF:GLRX3, PICOT,
TXNL2

Chr 10

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
574	48	TTG ...	LWS ...	Ribo-seq	TTG	weak	27	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
99241	48	GTG ...	VYR ...	Ribo-seq	GTG		9	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
525096	45	CTG ...	LAA ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	BJ, Blood, HEK293, HeLa, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
900196	72	TTC ...	FDR ...	Ribo-seq	TTC	strong	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
1438581	84	TTG ...	LTH ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS NMD Overlapping sORF	HeLa
2540668	48	CTG ...	LHA ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293
99236	36	ATG ...	MNI ...	Ribo-seq	ATG	weak	24	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
900202	51	GAA ...	EEL ...	Ribo-seq	GAA		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
900198	75	GGG ...	GTQ ...	Ribo-seq	GGG	moderate	1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
1046795	51	TTG ...	LED ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	guo_2014, HeLa
900192	237	ATC ...	IFS ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
598	54	TTG ...	LAY ...	Ribo-seq	TTG	moderate	20	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1296295	102	ATG ...	MHL ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS NMD Overlapping sORF	HEK293, HEK293T, HeLa, hES
405695	189	TGG ...	WAP ...	Ribo-seq	TGG		6	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
99226	60	GTG ...	VEE ...	Ribo-seq	GTG		15	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, HFF, Jurkat, loayza_puch_2016, MM1S, RPE-1
592	180	GTG ...	VLY ...	Ribo-seq	GTG		17	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, RPE-1
900194	87	AGA ...	RGS ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
99250	45	GTG ...	VLN ...	Ribo-seq	GTG		17	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
594	96	TTG ...	LIS ...	Ribo-seq	TTG	moderate	28	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
900173	126	AAT ...	NEH ...	Ribo-seq	AAT		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
579	51	ATG ...	MGS ...	Ribo-seq	ATG	strong	24	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
99238	93	TTG ...	LKK ...	Ribo-seq	TTG		6	sORFs_org_Human	InCDS NMD Overlapping sORF	Flp-In_T-REx-293, HEK293, HeLa, hES
1301464	63	GCC ...	AVE ...	Ribo-seq	GCC		1	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ
279192	39	GTG ...	VCT ...	Ribo-seq	GTG	moderate	11	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MM1S, RPE-1
405705	57	GCT ...	APS ...	Ribo-seq	GCT	moderate	2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, Jurkat
99243	282	GTG ...	VEI ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	guo_2014, HEK293, HeLa
1046797	42	TTG ...	LDI ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	guo_2014, HEK293
590	180	TTG ...	LTK ...	Ribo-seq	TTG		25	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MM1S, RPE-1, THP-1, U2OS
900200	54	CCT ...	PIP ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
405697	171	CAG ...	QMN ...	Ribo-seq	CAG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, Jurkat
99248	30	GTG ...	VLI ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	guo_2014, HEK293, HeLa
900179	66	ATT ...	IDS ...	Ribo-seq	ATT		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
577	60	CTG ...	LGT ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
900161	51	GTC ...	VGS ...	Ribo-seq	GTC		2	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Jurkat
900181	45	ACT ...	TPQ ...	Ribo-seq	ACT		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
99234	60	GTG ...	VAP ...	Ribo-seq	GTG	moderate	21	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
900189	270	CAC ...	HKH ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
900177	75	CTT ...	LEE ...	Ribo-seq	CTT		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
600	42	TTG ...	LNM ...	Ribo-seq	TTG		22	sORFs_org_Human	InCDS NMD Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1
900183	36	GAA ...	EPR ...	Ribo-seq	GAA		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
99232	69	ATG ...	MHL ...	Ribo-seq	ATG	moderate	21	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
900187	279	GAA ...	EIL ...	Ribo-seq	GAA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
596	81	ATG ...	MKR ...	Ribo-seq	ATG	weak	27	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
900175	99	CTT ...	LRL ...	Ribo-seq	CTT		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
900158	45	AGC ...	SCS ...	Ribo-seq	AGC	moderate	2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, Jurkat
900185	147	GCA ...	ASR ...	Ribo-seq	GCA	weak	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
602	36	ATG ...	MKH ...	Ribo-seq	ATG		16	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1

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