Transcript 568 | MetamORF

Transcript

ID CARD

MetamORF ID

568

ENST00000368759

Name

BCCIP-203

Strand

Biotype

protein_coding

Start-end positions

125823546-125853695

CDS Start-stop positions

125823558-125853243

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:978

Aliases

BCCIP,
BCCIPalpha, ENSG00000107949, HGNC:978,
NCBI:56647, OFF:BCCIP, TOK-1

Chr 10

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
405675	90	GCT ...	AWR ...	Ribo-seq	GCT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
279952	150	GTG ...	VPW ...	Ribo-seq	GTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
279968	33	ATG ...	MKR ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
570	36	TTG ...	LQM ...	Ribo-seq	TTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
900020	42	TCT ...	SEG ...	Ribo-seq	TCT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
900018	60	AGT ...	SDS ...	Ribo-seq	AGT	strong	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
99154	30	ATG ...	MQR ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
279013	135	GTG ...	VGF ...	Ribo-seq	GTG		26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
279966	48	GTG ...	VTR ...	Ribo-seq	GTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
900016	54	AGT ...	SSD ...	Ribo-seq	AGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
900764	132	GCT ...	AWR ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1720610	39	ATG ...	MTE ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
1720608	45	ATG ...	MIM ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
279956	72	ATG ...	MRM ...	Ribo-seq	ATG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
3199667	45	ACA ...	TIP ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
952	108	ATG ...	MSL ...	Ribo-seq	ATG		12	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
99158	78	TTG ...	LEV ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES
279011	147	GTG ...	VPW ...	Ribo-seq	GTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
567	33	ATG ...	MWE ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
1720605	75	TTG ...	LNL ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
99156	87	CTG ...	LRC ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
481187	69	TTG ...	LKL ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, Jurkat, MDA-MB-231
405913	153	GGC ...	GVP ...	Ribo-seq	GGC		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HCT116, HEK293, Jurkat
900757	168	CGT ...	RPG ...	Ribo-seq	CGT		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
899990	165	CGT ...	RPG ...	Ribo-seq	CGT		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, Jurkat, THP-1
279960	66	ATG ...	MKT ...	Ribo-seq	ATG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
279964	54	ATG ...	MTV ...	Ribo-seq	ATG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
948	108	CTG ...	LKE ...	Ribo-seq	CTG		18	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
279962	57	ATG ...	MMT ...	Ribo-seq	ATG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
99151	63	TTG ...	LWK ...	Ribo-seq	TTG	weak	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, HFF, LCL, MDA-MB-231
405661	150	GGC ...	GVP ...	Ribo-seq	GGC		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HCT116, HEK293, Jurkat
900766	123	TCC ...	SRH ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
405677	81	TCC ...	SRH ...	Ribo-seq	TCC		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293, Jurkat
279954	138	GTG ...	VGF ...	Ribo-seq	GTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
950	123	GTG ...	VKD ...	Ribo-seq	GTG		12	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1

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