Transcript 5617 | MetamORF

Transcript

ID CARD

MetamORF ID

5617

ENST00000529797

Name

AIP-204

Strand

Biotype

retained_intron

Start-end positions

67483049-67489678

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

HGNC:358

Aliases

AIP,
ARA9, ENSG00000110711, FKBP16,
HGNC:358, NCBI:9049, OFF:AIP,
XAP2

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5619	42	GTG ...	VHH ...	Ribo-seq	GTG	weak	15	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
910318	72	GTT ...	VQA ...	Ribo-seq	GTT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
3224008	258	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
910320	66	GCT ...	AAC ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
288259	246	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	LCL
5623	240	GTG ...	VTS ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa
5616	57	GTG ...	VGD ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
910314	120	CGA ...	RQP ...	Ribo-seq	CGA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
3224006	291	GTG ...	VFV ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HeLa
910324	141	GCA ...	APC ...	Ribo-seq	GCA		1	sORFs_org_Human	Intronic sORF	Jurkat
1440722	120	GTG ...	VIQ ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HeLa
5627	201	TTG ...	LPS ...	Ribo-seq	TTG		15	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
2616476	54	GGA ...	GWR ...	Ribo-seq	GGA	moderate	2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
103061	33	ATG ...	MAL ...	Ribo-seq	ATG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
288255	45	ATG ...	MWP ...	Ribo-seq	ATG		6	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, LCL
288257	285	GTG ...	VAH ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HeLa, LCL
910316	204	GCA ...	ASP ...	Ribo-seq	GCA		1	sORFs_org_Human	Intronic sORF	Jurkat
910310	159	ATC ...	IIA ...	Ribo-seq	ATC		1	sORFs_org_Human	Intronic sORF	Jurkat
288253	81	TTG ...	LPK ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Intronic sORF	HeLa, LCL, MDA-MB-231, MM1S
103067	255	CTG ...	LDD ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HEK293
5625	222	GTG ...	VTE ...	Ribo-seq	GTG		7	sORFs_org_Human	Intronic sORF	HEK293, HeLa, MDA-MB-231, RPE-1
910322	51	GAC ...	DHR ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
5629	186	ATG ...	MWS ...	Ribo-seq	ATG	moderate	15	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
103063	282	CTG ...	LHS ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES
103065	258	GTG ...	VLD ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HEK293
5621	249	GTG ...	VDP ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HEK293, HeLa

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