Transcript 5600 | MetamORF

Transcript

ID CARD

MetamORF ID

5600

ENST00000487404

Name

YARS-208

Strand

Biotype

processed_transcript

Start-end positions

32775681-32783755

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTA ...

Genome browsers

UCSC

Gene

HGNC:12840

Aliases

ENSG00000134684,
HGNC:12840, NCBI:8565, OFF:YARS,
tyrRS, YARS, YRS,
YTS

Chr 1

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1825564	162	CTG ...	LSH ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
5640	150	GTG ...	VFV ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
5599	48	CTG ...	LGS ...	Ribo-seq	CTG	strong	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
88019	57	GTG ...	VWG ...	Ribo-seq	GTG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
103221	144	GTG ...	VKG ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
891530	66	TGG ...	WIS ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1825558	228	CTG ...	LLH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	ncRNA sORF	HeLa
891512	87	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1825562	153	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
1825560	150	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa
1825556	84	TTG ...	LDS ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	ncRNA sORF	HeLa
1825552	108	CTG ...	LSG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	ncRNA sORF	HeLa
1825554	159	GTG ...	VQN ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	ncRNA sORF	HeLa

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