Transcript 5597 | MetamORF

Transcript

ID CARD

MetamORF ID

5597

ENST00000542876

Name

PPP1CA-210

Strand

Biotype

protein_coding

Start-end positions

67400859-67421183

CDS Start-stop positions

-67421134

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

HGNC:9281

Aliases

ENSG00000172531,
HGNC:9281, NCBI:5499, OFF:PPP1CA,
PP-1A, PP1A, PP1alpha,
PPP1A, PPP1CA

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8796	147	TTG ...	LRP ...	Ribo-seq	TTG		30	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5596	78	GTG ...	VPE ...	Ribo-seq	GTG		30	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
408320	93	TTT ...	FPS ...	Ribo-seq	TTT		2	sORFs_org_Human	sORF	HCT116, Jurkat
2616939	63	GGA ...	GDF ...	Ribo-seq	GGA		2	sORFs_org_Human	sORF	HeLa, THP-1
910261	30	GCT ...	ARG ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	sORF	Jurkat
408322	66	CCG ...	PGD ...	Ribo-seq	CCG		2	sORFs_org_Human	sORF	HCT116, Jurkat
408326	114	GAA ...	ECT ...	Ribo-seq	GAA		4	sORFs_org_Human	sORF	HCT116, HeLa, Jurkat, THP-1
408324	99	AGA ...	RER ...	Ribo-seq	AGA		2	sORFs_org_Human	sORF	HCT116, Jurkat
8794	78	GTG ...	VPE ...	Ribo-seq	GTG		31	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
916717	126	GCG ...	AAW ...	Ribo-seq	GCG		4	sORFs_org_Human	sORF	HEK293, HeLa, Jurkat, THP-1
409748	114	GAA ...	ECT ...	Ribo-seq	GAA		4	sORFs_org_Human	sORF	HCT116, HeLa, Jurkat, THP-1
910254	255	CAG ...	QYY ...	Ribo-seq	CAG		1	sORFs_org_Human	sORF	Jurkat
910259	126	GCG ...	AAW ...	Ribo-seq	GCG		4	sORFs_org_Human	sORF	HEK293, HeLa, Jurkat, THP-1
409746	99	AGA ...	RER ...	Ribo-seq	AGA		2	sORFs_org_Human	sORF	HCT116, Jurkat
295178	255	CTG ...	LWA ...	Ribo-seq	CTG		6	sORFs_org_Human	sORF	guo_2014, HEK293T, HeLa, hES, LCL, loayza_puch_2016
409744	66	CCG ...	PGD ...	Ribo-seq	CCG		2	sORFs_org_Human	sORF	HCT116, Jurkat
2616471	63	GGA ...	GDF ...	Ribo-seq	GGA		2	sORFs_org_Human	sORF	HeLa, THP-1

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