Transcript 5572 | MetamORF

Transcript

ID CARD

MetamORF ID

5572

ENST00000537694

Name

PPP1CA-209

Strand

Biotype

processed_transcript

Start-end positions

67398936-67407264

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

HGNC:9281

Aliases

ENSG00000172531,
HGNC:9281, NCBI:5499, OFF:PPP1CA,
PP-1A, PP1A, PP1alpha,
PPP1A, PPP1CA

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
288157	222	ATG ...	MWT ...	Ribo-seq	ATG		11	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1
288153	36	CTG ...	LTA ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
5586	141	CTG ...	LLL ...	Ribo-seq	CTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
5592	189	CTG ...	LGD ...	Ribo-seq	CTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
103057	273	TTG ...	LSM ...	Ribo-seq	TTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1, THP-1
5594	240	CTG ...	LRL ...	Ribo-seq	CTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
288149	102	TTG ...	LFE ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HeLa, LCL
3200706	267	TCT ...	SME ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	HEK293
910240	51	GCA ...	AVY ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
288160	267	ATG ...	MAV ...	Ribo-seq	ATG		18	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1, THP-1
5590	177	GTG ...	VDR ...	Ribo-seq	GTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5571	57	CTG ...	LPA ...	Ribo-seq	CTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5582	135	CTG ...	LAY ...	Ribo-seq	CTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
288147	90	GTG ...	VTF ...	Ribo-seq	GTG		14	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, LCL, loayza_puch_2016, RPE-1, THP-1, U2OS
5580	99	CTG ...	LLR ...	Ribo-seq	CTG		21	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, THP-1, U2OS
910238	36	GAT ...	DSA ...	Ribo-seq	GAT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
5576	51	CTG ...	LGR ...	Ribo-seq	CTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
910242	30	CGA ...	RKD ...	Ribo-seq	CGA		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
5588	156	TTG ...	LET ...	Ribo-seq	TTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
5584	138	CTG ...	LLA ...	Ribo-seq	CTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, THP-1, U2OS
5578	39	GTG ...	VCQ ...	Ribo-seq	GTG	weak	14	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, Monocyte, RPE-1, THP-1
5574	66	CTG ...	LLQ ...	Ribo-seq	CTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2616467	30	CAA ...	QHQ ...	Ribo-seq	CAA	weak	2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1

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