Transcript 557 | MetamORF

Transcript

ID CARD

MetamORF ID

557

ENST00000463330

Name

BCCIP-204

Strand

Biotype

processed_transcript

Start-end positions

125823610-125831650

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

HGNC:978

Aliases

BCCIP,
BCCIPalpha, ENSG00000107949, HGNC:978,
NCBI:56647, OFF:BCCIP, TOK-1

Chr 10

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
279015	69	ATG ...	MRM ...	Ribo-seq	ATG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
279021	51	ATG ...	MTV ...	Ribo-seq	ATG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
946	201	GTG ...	VIK ...	Ribo-seq	GTG		23	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
279017	63	ATG ...	MKT ...	Ribo-seq	ATG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
279023	45	GTG ...	VTR ...	Ribo-seq	GTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
899993	180	CAG ...	QRD ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
899997	126	GAC ...	DSD ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
944	255	GTG ...	VNT ...	Ribo-seq	GTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
405663	153	GTC ...	VEN ...	Ribo-seq	GTC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
900012	51	ATT ...	INV ...	Ribo-seq	ATT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
279019	54	ATG ...	MMT ...	Ribo-seq	ATG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
563	111	CTG ...	LDK ...	Ribo-seq	CTG	moderate	18	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
556	162	TTG ...	LVL ...	Ribo-seq	TTG	strong	24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
900762	219	CAG ...	QNH ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
279025	30	ATG ...	MKR ...	Ribo-seq	ATG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
565	78	GTG ...	VGL ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	ncRNA sORF	Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
631967	33	ATG ...	MTP ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231, THP-1

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