Transcript 533374

Transcript

ID CARD

MetamORF ID

533374

ENST00000527638

Name

TOLLIP-205

Strand

Biotype

processed_transcript

Start-end positions

1290915-1309597

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:16476

Aliases

ENSG00000078902,
HGNC:16476, IL-1RAcPIP, NCBI:54472,
OFF:TOLLIP, TOLLIP

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
535099	96	CTG ...	LDA ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	BJ, Brain, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
917465	186	GTC ...	VST ...	Ribo-seq	GTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
940873	36	CTG ...	LNI ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	Brain
941879	165	GTG ...	VYI ...	Ribo-seq	GTG		7	sORFs_org_Human	ncRNA sORF	BJ, Brain, hES, HFF, MDA-MB-231, RPE-1
533376	72	CTG ...	LQY ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	BJ, Brain, HeLa, hES, RPE-1, U2OS
940875	45	GTG ...	VGR ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	Brain
941876	204	CTG ...	LSG ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	BJ, Brain, HeLa, MDA-MB-231, RPE-1
533373	54	GTG ...	VGT ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	BJ, Brain, hES, RPE-1, U2OS
917471	102	GTC ...	VQL ...	Ribo-seq	GTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
915571	60	GGC ...	GAV ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
917469	111	CAG ...	QRQ ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
917467	165	TGG ...	WRP ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat

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