Transcript 529578

Transcript

ID CARD

MetamORF ID

529578

ENST00000301886

Name

ARL2-SNX15-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

65014182-65040570

CDS Start-stop positions

65014208-65027320

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:49197

Aliases

ARL2-SNX15,
ENSG00000273003, HGNC:49197, NCBI:100528018,
OFF:ARL2-SNX15

Chr 11

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
529588	240	GTG ...	VAE ...	Ribo-seq	GTG		7	sORFs_org_Human	Downstream NMD sORF	BJ, guo_2014, hES, MDA-MB-231, RPE-1, U2OS
909258	99	CAG ...	QAL ...	Ribo-seq	CAG		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
2316827	105	CTG ...	LGA ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
2316821	117	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Human	Downstream NMD sORF	MDA-MB-231
909256	234	GAG ...	ELA ...	Ribo-seq	GAG		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
529600	78	GTG ...	VKK ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014, HeLa, HFF, MDA-MB-231, RPE-1, U2OS
909260	33	CAC ...	HVL ...	Ribo-seq	CAC		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
1507090	114	CTG ...	LSW ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, RPE-1
3308068	39	ATG ...	MPP ...	Ribo-seq	ATG	weak	1	Johnstone2016	Downstream NMD sORF	Brain_tumor, HEK293, HeLa, HFF
529604	33	CTG ...	LRL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014, HeLa, HFF, RPE-1, U2OS
8699	78	ATG ...	MGR ...	Ribo-seq	ATG		1	Johnstone2016	InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
529590	231	CTG ...	LAT ...	Ribo-seq	CTG		7	sORFs_org_Human	Downstream NMD sORF	BJ, guo_2014, hES, MDA-MB-231, RPE-1, U2OS
1596767	39	CTG ...	LGF ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	loayza_puch_2016
2316833	33	GTG ...	VTR ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
1507097	33	ATG ...	MGK ...	Ribo-seq	ATG	strong	2	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, MDA-MB-231
529584	132	GTG ...	VVV ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, RPE-1, U2OS
909252	90	GGA ...	GDL ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
529594	201	CTG ...	LDQ ...	Ribo-seq	CTG		7	sORFs_org_Human	Downstream NMD sORF	BJ, guo_2014, hES, MDA-MB-231, RPE-1, U2OS
1507085	96	CTG ...	LHG ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, RPE-1
909248	186	CTA ...	LHS ...	Ribo-seq	CTA		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
4905	75	ATG ...	MWV ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1507094	87	CTG ...	LQG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, RPE-1
2316831	36	GTG ...	VHV ...	Ribo-seq	GTG		4	sORFs_org_Human	Downstream NMD sORF	HeLa, MDA-MB-231, RPE-1
1206180	129	GTG ...	VEA ...	Ribo-seq	GTG	strong	6	sORFs_org_Human	Alternative Downstream NMD sORF	HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
529598	99	TTG ...	LPA ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014, HeLa, HFF, MDA-MB-231, RPE-1, U2OS
909244	69	ACT ...	TSC ...	Ribo-seq	ACT	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2684702	159	CTG ...	LGR ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative Downstream NMD sORF	RPE-1
909240	84	GCC ...	ARR ...	Ribo-seq	GCC	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
909242	123	GCG ...	AKD ...	Ribo-seq	GCG		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
529592	216	GTG ...	VES ...	Ribo-seq	GTG		7	sORFs_org_Human	Downstream NMD sORF	BJ, guo_2014, hES, MDA-MB-231, RPE-1, U2OS
3308050	342	ATG ...	MGL ...	Ribo-seq	ATG		1	Johnstone2016	CDS NMD	Brain_tumor, HEK293, HeLa, HFF
529602	54	CTG ...	LKR ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014, HeLa, RPE-1, U2OS
529596	93	CTG ...	LRD ...	Ribo-seq	CTG		8	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, guo_2014, HeLa, hES, MDA-MB-231, RPE-1, U2OS
529586	129	GTG ...	VVW ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, MDA-MB-231, RPE-1, U2OS
529577	72	ATG ...	MTS ...	Ribo-seq	ATG	moderate	14	sORFs_org_Human Johnstone2016	Alternative Downstream NMD sORF	Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
529580	108	CTG ...	LRH ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa, RPE-1, U2OS
1507087	120	ATG ...	MWL ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, RPE-1
529582	93	GTG ...	VSD ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa, U2OS
2684709	84	CTG ...	LAY ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	RPE-1
909246	192	GCG ...	AAL ...	Ribo-seq	GCG		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
909250	96	ACA ...	TVS ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
3308065	1029	ATG ...	MSR ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD	Brain_tumor, HEK293, HeLa, HFF

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