Transcript 526395

Transcript

ID CARD

MetamORF ID

526395

ENST00000531411

Name

PTDSS2-211

Strand

Biotype

retained_intron

Start-end positions

489350-490546

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:15463

Aliases

ENSG00000174915,
HGNC:15463, NCBI:81490, OFF:PTDSS2,
PSS2, PTDSS2

Chr 11

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
526405	108	CTG ...	LWM ...	Ribo-seq	CTG		10	sORFs_org_Human	Intronic sORF	BJ, Brain, HEK293, HeLa, hES, HFF, RPE-1, U2OS
903026	126	TTC ...	FYL ...	Ribo-seq	TTC		1	sORFs_org_Human	Intronic sORF	Jurkat
526403	111	GTG ...	VLW ...	Ribo-seq	GTG		10	sORFs_org_Human	Intronic sORF	BJ, Brain, HEK293, HeLa, hES, HFF, RPE-1, U2OS
526399	135	CTG ...	LNT ...	Ribo-seq	CTG		11	sORFs_org_Human	Intronic sORF	BJ, Brain, HEK293, HeLa, hES, HFF, RPE-1, U2OS
526394	147	CTG ...	LLA ...	Ribo-seq	CTG		12	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HEK293, HeLa, hES, HFF, RPE-1, U2OS
526409	75	CTG ...	LRL ...	Ribo-seq	CTG		11	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, RPE-1, U2OS
526407	84	CTG ...	LVL ...	Ribo-seq	CTG		11	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, RPE-1, U2OS
526411	57	GTG ...	VNV ...	Ribo-seq	GTG		13	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
526413	51	GTG ...	VGG ...	Ribo-seq	GTG		14	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
526397	144	TTG ...	LAE ...	Ribo-seq	TTG		11	sORFs_org_Human	Intronic sORF	BJ, Brain, HEK293, HeLa, hES, HFF, RPE-1, U2OS
1722347	78	GTG ...	VDA ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Intronic sORF	Blood
526415	42	GTG ...	VAM ...	Ribo-seq	GTG		16	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
526401	120	CTG ...	LKF ...	Ribo-seq	CTG		12	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, Jurkat, RPE-1, U2OS

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