Transcript 526390

Transcript

ID CARD

MetamORF ID

526390

ENST00000527325

Name

PTDSS2-206

Strand

Biotype

retained_intron

Start-end positions

487239-489730

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:15463

Aliases

ENSG00000174915,
HGNC:15463, NCBI:81490, OFF:PTDSS2,
PSS2, PTDSS2

Chr 11

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
526392	63	GTG ...	VDH ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	U2OS
1296728	42	CTG ...	LQR ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Intronic sORF	HEK293, HEK293T, MDA-MB-231
1986037	33	TTG ...	LFP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Intronic sORF	HeLa, hES, MDA-MB-231
903018	129	TGC ...	CMI ...	Ribo-seq	TGC		1	sORFs_org_Human	Intronic sORF	Jurkat
903022	231	GAC ...	DVL ...	Ribo-seq	GAC		1	sORFs_org_Human	Intronic sORF	Jurkat
903020	123	ATC ...	IIS ...	Ribo-seq	ATC		1	sORFs_org_Human	Intronic sORF	Jurkat
1135939	114	GTG ...	VMF ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HEK293
1818627	39	ATG ...	MAL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Intronic sORF	HeLa, hES
903024	216	AAC ...	NGL ...	Ribo-seq	AAC		1	sORFs_org_Human	Intronic sORF	Jurkat
526389	153	CTG ...	LMI ...	Ribo-seq	CTG		7	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, RPE-1, U2OS

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