Transcript 5241 | MetamORF

Transcript

ID CARD

MetamORF ID

5241

ENST00000476391

Name

HDAC1-206

Strand

Biotype

retained_intron

Start-end positions

32329480-32333635

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:4852

Aliases

ENSG00000116478,
GON-10, HD1, HDAC1,
HGNC:4852, KDAC1, NCBI:3065,
OFF:HDAC1, RPD3L1

Chr 1

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1825098	123	CTG ...	LGE ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Intronic sORF	HeLa
5266	51	TTG ...	LNT ...	Ribo-seq	TTG	moderate	16	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
5245	156	CTG ...	LML ...	Ribo-seq	CTG		14	sORFs_org_Human	Intronic sORF	guo_2014, HAP1, HEK293, HEK293T, HeLa, hES
5264	60	ATG ...	MTT ...	Ribo-seq	ATG	moderate	19	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
408260	42	ACC ...	TRF ...	Ribo-seq	ACC	weak	3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
2959594	114	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	hES
408243	102	AAT ...	NDY ...	Ribo-seq	AAT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
5243	165	CTG ...	LPM ...	Ribo-seq	CTG		9	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, HEK293T, HeLa, hES
1825102	69	TTG ...	LNH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
1825105	42	GTG ...	VKG ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
1825096	126	GTG ...	VLG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
5268	42	TTG ...	LDQ ...	Ribo-seq	TTG	strong	13	sORFs_org_Human	Intronic sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
5247	150	CTG ...	LGG ...	Ribo-seq	CTG		10	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, HEK293T, HeLa, hES
1825100	39	TTG ...	LPP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
5240	189	GTG ...	VEF ...	Ribo-seq	GTG		9	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, HEK293T, HeLa, hES
408252	84	TTT ...	FGP ...	Ribo-seq	TTT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat

Export data