Transcript 5194 | MetamORF

Transcript

ID CARD

MetamORF ID

5194

ENST00000279270

Name

SCYL1-202

Strand

Biotype

protein_coding

Start-end positions

65530639-65538701

CDS Start-stop positions

65531636-65537094

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:14372

Aliases

ENSG00000142186,
GKLP, HGNC:14372, HT019,
MGC78454, NCBI:57410, NKTL,
NTKL, OFF:SCYL1, P105,
SCYL1, TAPK, TEIF,
TRAP

Chr 11

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1822150	30	TTG ...	LLP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
3017192	87	CTG ...	LSW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	MM1S
916614	201	TCT ...	SAR ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative Downstream sORF	Jurkat
2684971	39	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
2317197	51	CTG ...	LQH ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
287609	45	ATG ...	MGR ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative Downstream sORF	BJ, LCL
5193	117	CTG ...	LAS ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative Downstream sORF	HEK293, hES, HFF
1822154	33	CTG ...	LEH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2317199	36	CTG ...	LPG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
408148	60	CGC ...	RAE ...	Ribo-seq	CGC	strong	1	sORFs_org_Human	Alternative Downstream sORF	HCT116
1507303	111	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
408144	48	ACG ...	TTV ...	Ribo-seq	ACG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
287605	51	CTG ...	LCP ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
1507301	75	ATG ...	MNR ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231, RPE-1
1507310	108	CTG ...	LAR ...	Ribo-seq	CTG	strong	8	sORFs_org_Human	Alternative Downstream sORF	BJ, hES, HFF, MDA-MB-231, MM1S, RPE-1
2328510	204	CTG ...	LWW ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa, MDA-MB-231
2684977	45	GTG ...	VAK ...	Ribo-seq	GTG	strong	3	sORFs_org_Human	Alternative Downstream sORF	hES, RPE-1
287607	42	GTG ...	VPR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231, MM1S
3201231	183	CAG ...	QPR ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative Downstream sORF	HEK293
1507308	45	CTG ...	LCW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Downstream sORF	BJ, MDA-MB-231
2317205	48	TTG ...	LRV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2328517	186	ATG ...	MNR ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2317201	93	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
534281	267	CTG ...	LAS ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
3200633	201	TGG ...	WSS ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative Downstream sORF	HEK293
2317203	63	TTG ...	LHR ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2328514	207	TTG ...	LHG ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
408146	72	GAC ...	DSW ...	Ribo-seq	GAC		1	sORFs_org_Human	Alternative Downstream sORF	HCT116
1507297	39	CTG ...	LTG ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, MDA-MB-231, RPE-1
2328508	231	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa, MDA-MB-231
2317192	66	CTG ...	LWW ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa, MDA-MB-231
2317188	42	CTG ...	LRI ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative sORF Upstream	MDA-MB-231
2317215	48	CTG ...	LGT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	MDA-MB-231
909670	141	GAG ...	EPP ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative Downstream sORF	Jurkat
2328512	177	CTG ...	LTG ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
2317207	42	GTG ...	VSW ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
916612	291	GAG ...	EPP ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative Downstream sORF	Jurkat
2317190	93	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa, MDA-MB-231
534283	204	CTG ...	LSA ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative Downstream sORF	BJ, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
1507305	102	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
2317217	36	CTG ...	LAG ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Downstream sORF	MDA-MB-231
2684973	36	CTG ...	LGP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
1507299	96	TTG ...	LHG ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, MDA-MB-231, RPE-1
909666	192	CTG ...	LSK ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat

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