Transcript 5183 | MetamORF

Transcript

ID CARD

MetamORF ID

5183

ENST00000482310

Name

HDAC1-208

Strand

Biotype

processed_transcript

Start-end positions

32327274-32331582

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

HGNC:4852

Aliases

ENSG00000116478,
GON-10, HD1, HDAC1,
HGNC:4852, KDAC1, NCBI:3065,
OFF:HDAC1, RPD3L1

Chr 1

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
288851	45	GTG ...	VTA ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, THP-1
288847	60	TTG ...	LIF ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, THP-1
5229	36	ATG ...	MTS ...	Ribo-seq	ATG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
5191	57	CTG ...	LCP ...	Ribo-seq	CTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
5219	87	CTG ...	LAK ...	Ribo-seq	CTG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
482496	99	CTG ...	LIL ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
906524	183	GGC ...	GKG ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
5225	66	CTG ...	LLT ...	Ribo-seq	CTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
288849	48	ATG ...	MVT ...	Ribo-seq	ATG	strong	11	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, THP-1
5185	204	CTG ...	LYI ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL
5182	207	GTG ...	VLY ...	Ribo-seq	GTG		17	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL
5223	69	ATG ...	MLL ...	Ribo-seq	ATG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
906526	33	ACG ...	TSP ...	Ribo-seq	ACG		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
3199820	147	CGA ...	RDG ...	Ribo-seq	CGA		1	sORFs_org_Human	ncRNA sORF	HEK293
408228	114	TAT ...	YGE ...	Ribo-seq	TAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
5196	39	ATG ...	MES ...	Ribo-seq	ATG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
5205	114	ATG ...	MAF ...	Ribo-seq	ATG		10	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, LCL
5187	66	TTG ...	LTL ...	Ribo-seq	TTG	moderate	14	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, THP-1
906507	54	CGT ...	RGR ...	Ribo-seq	CGT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
906520	42	CTT ...	LPR ...	Ribo-seq	CTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
5189	168	GTG ...	VEE ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, HFF
5227	39	TTG ...	LMT ...	Ribo-seq	TTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
906522	30	TGG ...	WGP ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
906500	192	ATT ...	IDI ...	Ribo-seq	ATT		1	sORFs_org_Human	ncRNA sORF	Jurkat

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