Transcript 5168 | MetamORF

Transcript

ID CARD

MetamORF ID

5168

ENST00000531989

Name

DPF2-208

Strand

Biotype

protein_coding

Start-end positions

65345741-65352981

CDS Start-stop positions

-65351759

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:9964

Aliases

BAF45d,
DPF2, ENSG00000133884, HGNC:9964,
NCBI:5977, OFF:DPF2, REQ,
ubi-d4

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
909561	36	GAC ...	DGT ...	Ribo-seq	GAC	strong	1	sORFs_org_Human	sORF	Jurkat
909551	48	GGA ...	GQG ...	Ribo-seq	GGA		1	sORFs_org_Human	sORF	Jurkat
1317622	177	TTG ...	LAL ...	Ribo-seq	TTG		6	sORFs_org_Human	sORF	HEK293, HeLa, hES, HFF
909555	165	AAC ...	NNY ...	Ribo-seq	AAC		1	sORFs_org_Human	sORF	Jurkat
408118	75	CGC ...	RSG ...	Ribo-seq	CGC		1	sORFs_org_Human	sORF	HCT116
909563	87	TCT ...	SDC ...	Ribo-seq	TCT		1	sORFs_org_Human	sORF	Jurkat
909557	159	TAC ...	YCD ...	Ribo-seq	TAC		1	sORFs_org_Human	sORF	Jurkat
1317626	144	CTG ...	LGD ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293, HeLa
909567	45	CGA ...	RSW ...	Ribo-seq	CGA	weak	1	sORFs_org_Human	sORF	Jurkat
5167	48	CTG ...	LRS ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
909553	30	TGG ...	WIG ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	sORF	Jurkat
1317624	171	TTG ...	LPN ...	Ribo-seq	TTG		6	sORFs_org_Human	sORF	HEK293, HeLa, hES, HFF

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