Transcript 5128 | MetamORF

Transcript

ID CARD

MetamORF ID

5128

ENST00000534785

Name

POLA2-208

Strand

Biotype

processed_transcript

Start-end positions

65294178-65297552

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:30073

Aliases

ENSG00000014138,
FLJ21662, HGNC:30073, NCBI:23649,
OFF:POLA2, POLA2

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
917371	183	ATC ...	IIP ...	Ribo-seq	ATC		1	sORFs_org_Human	ncRNA sORF	Jurkat
5134	99	GTG ...	VSE ...	Ribo-seq	GTG		16	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
5146	57	ATG ...	MFT ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
5144	69	ATG ...	MSR ...	Ribo-seq	ATG		7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, Jurkat, LCL, MDA-MB-231
2545251	66	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293
2545253	60	CTG ...	LCT ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
5152	99	GTG ...	VGG ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, RPE-1
5127	99	TTG ...	LRD ...	Ribo-seq	TTG		11	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
5140	54	TTG ...	LTS ...	Ribo-seq	TTG		14	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
5136	84	CTG ...	LQP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, LCL
408107	45	ACA ...	TDL ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	HCT116
909515	108	GTA ...	VQF ...	Ribo-seq	GTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
5130	90	GTG ...	VHH ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF, THP-1
635672	66	CTG ...	LCE ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	ncRNA sORF	THP-1
2545248	75	ATG ...	MCT ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293
9260	156	GTG ...	VKD ...	Ribo-seq	GTG		11	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, RPE-1
9264	168	CTG ...	LRY ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, RPE-1
5132	75	GTG ...	VYP ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	HEK293, hES, HFF
1726603	30	TTG ...	LCP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	ncRNA sORF	Blood, HEK293
917367	72	ATA ...	ILK ...	Ribo-seq	ATA		1	sORFs_org_Human	ncRNA sORF	Jurkat
5150	129	GTG ...	VNP ...	Ribo-seq	GTG	weak	12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
5138	66	GTG ...	VIF ...	Ribo-seq	GTG		14	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
5142	75	TTG ...	LTM ...	Ribo-seq	TTG		6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, LCL, MDA-MB-231
909517	33	ATA ...	ILK ...	Ribo-seq	ATA		1	sORFs_org_Human	ncRNA sORF	Jurkat
635670	72	CTG ...	LCL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	ncRNA sORF	THP-1
9262	207	CTG ...	LPV ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
5148	39	CTG ...	LSP ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, U2OS
102797	42	CTG ...	LSR ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
1137563	39	CTG ...	LLF ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, RPE-1

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