Transcript 5095 | MetamORF

Transcript

ID CARD

MetamORF ID

5095

ENST00000472928

Name

HDAC1-205

Strand

Biotype

processed_transcript

Start-end positions

32292161-32327677

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:4852

Aliases

ENSG00000116478,
GON-10, HD1, HDAC1,
HGNC:4852, KDAC1, NCBI:3065,
OFF:HDAC1, RPD3L1

Chr 1

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5101	39	ATG ...	MLE ...	Ribo-seq	ATG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
408200	162	ACG ...	TLV ...	Ribo-seq	ACG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
906360	168	GCC ...	ANA ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
906373	48	GCA ...	ASR ...	Ribo-seq	GCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
482479	117	TTG ...	LRS ...	Ribo-seq	TTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa
1297397	42	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293T
5103	36	TTG ...	LEI ...	Ribo-seq	TTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
408171	36	CAC ...	HPE ...	Ribo-seq	CAC		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
5172	138	GTG ...	VNW ...	Ribo-seq	GTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, RPE-1, THP-1
906371	96	ACA ...	TLN ...	Ribo-seq	ACA		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
906274	120	AAG ...	KSV ...	Ribo-seq	AAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
906394	96	GAG ...	EDC ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
906439	33	GTC ...	VRG ...	Ribo-seq	GTC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
408187	54	CTC ...	LII ...	Ribo-seq	CTC		4	sORFs_org_Human	ncRNA sORF	HCT116, HeLa, Jurkat, THP-1
102883	54	TTG ...	LST ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
906354	240	AAA ...	KNG ...	Ribo-seq	AAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
906404	165	CTT ...	LNK ...	Ribo-seq	CTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
5176	120	CTG ...	LHH ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, RPE-1, THP-1
5174	87	CTG ...	LGA ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231
482489	63	TTG ...	LGW ...	Ribo-seq	TTG	strong	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231
5114	33	ATG ...	MVS ...	Ribo-seq	ATG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
5099	63	CTG ...	LSL ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL
906385	33	GAT ...	DVS ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
906341	165	CTC ...	LYR ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
5125	102	ATG ...	MTT ...	Ribo-seq	ATG		15	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016
102880	72	CTG ...	LFE ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, LCL
5165	33	CTG ...	LSV ...	Ribo-seq	CTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
906332	180	CTG ...	LLN ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	Jurkat
5178	72	ATG ...	MQR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231
906283	246	GGA ...	GNY ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
5170	171	GTG ...	VKL ...	Ribo-seq	GTG		27	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
408166	144	CGC ...	RRR ...	Ribo-seq	CGC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1137766	33	ATG ...	MIS ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
5097	69	GTG ...	VKL ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HEK293, HEK293T, LCL
906408	150	ACG ...	TDI ...	Ribo-seq	ACG		1	sORFs_org_Human	ncRNA sORF	Jurkat
906356	150	GAA ...	EIY ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
906369	147	AAG ...	KYH ...	Ribo-seq	AAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
5180	51	CTG ...	LAS ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
5094	75	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293
906300	198	CGC ...	RMT ...	Ribo-seq	CGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
408194	258	CAA ...	QLW ...	Ribo-seq	CAA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
408189	186	AAT ...	NLL ...	Ribo-seq	AAT		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
906290	219	CCA ...	PMK ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat

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