Transcript 501 | MetamORF

Transcript

ID CARD

MetamORF ID

501

ENST00000539214

Name

OAT-208

Strand

Biotype

protein_coding

Start-end positions

124397303-124418976

CDS Start-stop positions

124397942-124408750

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

HGNC:8091

Aliases

ENSG00000065154,
HGNC:8091, HOGA, NCBI:4942,
OAT, OFF:OAT

Chr 10

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
99048	36	TTG ...	LER ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293
909	120	TTG ...	LSL ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HFF, MDA-MB-231, RPE-1
934981	135	ATG ...	MVL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293
405902	36	CAG ...	QEW ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
915	99	TTG ...	LDH ...	Ribo-seq	TTG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1129428	33	TTG ...	LFL ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, hES
1093272	75	ATG ...	MKY ...	Ribo-seq	ATG	weak	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, RPE-1
99041	33	TTG ...	LSL ...	Ribo-seq	TTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, hES, RPE-1
928	180	TTG ...	LFL ...	Ribo-seq	TTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
913	60	ATG ...	MIC ...	Ribo-seq	ATG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
99045	36	TTG ...	LLK ...	Ribo-seq	TTG	moderate	14	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1203207	60	ATG ...	MDF ...	Ribo-seq	ATG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293
899877	96	CCT ...	PEF ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
511	78	CTG ...	LMK ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, RPE-1, U2OS
517	39	GTG ...	VLF ...	Ribo-seq	GTG	moderate	22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
99053	198	CTG ...	LGT ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, HFF
519	63	TTG ...	LSP ...	Ribo-seq	TTG	moderate	26	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
99036	36	ATG ...	MAT ...	Ribo-seq	ATG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
917	105	ATG ...	MVL ...	Ribo-seq	ATG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
921	168	CTG ...	LGT ...	Ribo-seq	CTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
1093270	33	CTG ...	LLI ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
513	81	TTG ...	LLM ...	Ribo-seq	TTG	weak	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
405626	36	GGA ...	GCL ...	Ribo-seq	GGA	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
99554	69	TTG ...	LER ...	Ribo-seq	TTG		9	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
99051	171	CTG ...	LLS ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293
509	33	CTG ...	LQC ...	Ribo-seq	CTG	weak	20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
515	39	GTG ...	VKQ ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
919	141	CTG ...	LLS ...	Ribo-seq	CTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
99055	90	GTG ...	VGL ...	Ribo-seq	GTG		4	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2902942	39	CTG ...	LHQ ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
899865	48	TGG ...	WRH ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1817615	36	CTG ...	LST ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	HeLa
500	30	TTG ...	LEG ...	Ribo-seq	TTG	moderate	23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
899871	129	TTG ...	LDH ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, Jurkat
900739	177	TTT ...	FLQ ...	Ribo-seq	TTT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
503	93	ATG ...	MLG ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
99043	33	CTG ...	LKM ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
899873	84	CTA ...	LYR ...	Ribo-seq	CTA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
505	39	TTG ...	LGC ...	Ribo-seq	TTG	strong	26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

Export data