Transcript 4973 | MetamORF

Transcript

ID CARD

MetamORF ID

4973

ENST00000530673

Name

VPS51-208

Strand

Biotype

protein_coding

Start-end positions

65110482-65111672

CDS Start-stop positions

-65111339

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:1172

Aliases

ANG2,
ANG3, C11orf2, C11orf3,
ENSG00000149823, FFR, HGNC:1172,
NCBI:738, OFF:VPS51, VPS51

Chr 11

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
102674	147	CTG ...	LQL ...	Ribo-seq	CTG	weak	17	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
4972	261	GTG ...	VSV ...	Ribo-seq	GTG	moderate	18	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
102670	168	GTG ...	VQV ...	Ribo-seq	GTG	weak	16	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
102668	177	CTG ...	LQQ ...	Ribo-seq	CTG	moderate	18	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
102688	84	GTG ...	VVA ...	Ribo-seq	GTG	strong	14	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
287242	111	GTG ...	VAF ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	sORF	Blood, HeLa, LCL, MDA-MB-231, MM1S
2328432	36	TTG ...	LMC ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	MDA-MB-231
102682	99	TTG ...	LLL ...	Ribo-seq	TTG	weak	16	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
102680	105	GTG ...	VHL ...	Ribo-seq	GTG	weak	16	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
294743	45	CTG ...	LNV ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	LCL, MDA-MB-231, MM1S
102678	123	GTG ...	VAD ...	Ribo-seq	GTG	moderate	16	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
102676	135	CTG ...	LWR ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
102666	201	CTG ...	LRT ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
4979	228	CTG ...	LKT ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
2316973	39	CTG ...	LPR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	sORF	MDA-MB-231, RPE-1
294741	126	GTG ...	VFA ...	Ribo-seq	GTG		4	sORFs_org_Human	sORF	BJ, HeLa, LCL, MDA-MB-231
938111	66	CTG ...	LRC ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
4975	255	GTG ...	VLT ...	Ribo-seq	GTG	weak	19	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
287240	135	CTG ...	LPL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	sORF	Blood, HeLa, LCL, MDA-MB-231
102690	81	GTG ...	VAS ...	Ribo-seq	GTG	strong	14	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
4981	219	CTG ...	LLE ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
102684	96	CTG ...	LLD ...	Ribo-seq	CTG	weak	15	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
1047995	48	GTG ...	VPM ...	Ribo-seq	GTG	weak	11	sORFs_org_Human	sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
102672	162	GTG ...	VDC ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
102686	93	CTG ...	LDE ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	sORF	Blood, Brain, HCT116, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
2328434	33	ATG ...	MCS ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	MDA-MB-231, MM1S
4977	252	CTG ...	LTG ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
4985	207	GTG ...	VRL ...	Ribo-seq	GTG	weak	19	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
287238	189	GTG ...	VCA ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	sORF	Blood, HeLa, LCL, MDA-MB-231
102663	216	CTG ...	LEC ...	Ribo-seq	CTG	moderate	18	sORFs_org_Human	sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
1047997	30	GTG ...	VVE ...	Ribo-seq	GTG	strong	9	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MM1S

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