Transcript 4909 | MetamORF

Transcript

ID CARD

MetamORF ID

4909

ENST00000529254

Name

ARL2-203

Strand

Biotype

retained_intron

Start-end positions

65021516-65022116

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

HGNC:693

Aliases

ARFL2,
ARL2, ENSG00000213465, HGNC:693,
NCBI:402, OFF:ARL2

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2616434	123	GAC ...	DSI ...	Ribo-seq	GAC	weak	2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
909236	54	GGC ...	GID ...	Ribo-seq	GGC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
909232	144	CCA ...	PSA ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
1821844	30	CTG ...	LCP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
4927	39	CTG ...	LDD ...	Ribo-seq	CTG	moderate	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1821838	69	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
909234	132	ACC ...	TTG ...	Ribo-seq	ACC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
1821840	66	CTG ...	LLC ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
4917	72	CTG ...	LVH ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4919	69	GTG ...	VHP ...	Ribo-seq	GTG	weak	21	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4915	126	CTG ...	LDS ...	Ribo-seq	CTG	strong	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4911	138	CTG ...	LAT ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, RPE-1, THP-1
1821842	42	ATG ...	MAG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
1206178	60	ATG ...	MTF ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Intronic sORF	Blood, HAP1, HeLa, hES, RPE-1
4908	147	CTG ...	LQS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, RPE-1
2616436	51	ATC ...	IDW ...	Ribo-seq	ATC	strong	2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
4913	132	CTG ...	LEL ...	Ribo-seq	CTG	strong	30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4923	63	CTG ...	LLP ...	Ribo-seq	CTG	moderate	30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4925	60	CTG ...	LPG ...	Ribo-seq	CTG	weak	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4921	57	CTG ...	LQR ...	Ribo-seq	CTG	moderate	20	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS

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