Transcript 4848 | MetamORF

Transcript

ID CARD

MetamORF ID

4848

ENST00000496969

Name

SF1-219

Strand

Biotype

processed_transcript

Start-end positions

64769542-64771607

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:12950

Aliases

ENSG00000168066,
HGNC:12950, NCBI:7536, OFF:SF1,
SF1, ZCCHC25, ZFM1,
ZNF162

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4847	33	TTG ...	LWG ...	Ribo-seq	TTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
408017	180	GCC ...	AKI ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	HCT116
4850	54	ATG ...	MST ...	Ribo-seq	ATG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
917306	84	GGC ...	GTT ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
9215	60	TTG ...	LHS ...	Ribo-seq	TTG		20	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
3200591	57	AAG ...	KMS ...	Ribo-seq	AAG		1	sORFs_org_Human	ncRNA sORF	HEK293
408015	153	TCT ...	SVK ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	HCT116
909125	51	AGT ...	STQ ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
408019	51	GAT ...	DEY ...	Ribo-seq	GAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
4852	78	GTG ...	VSD ...	Ribo-seq	GTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
909123	216	GGG ...	GNT ...	Ribo-seq	GGG		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat

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