Transcript 483684

Transcript

ID CARD

MetamORF ID

483684

ENST00000524902

Name

MTA2-202

Strand

Biotype

protein_coding

Start-end positions

62593215-62599317

CDS Start-stop positions

62593875-62597683

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

HGNC:7411

Aliases

ENSG00000149480,
HGNC:7411, MTA1-L1, MTA1L1,
MTA2, NCBI:9219, OFF:MTA2

Chr 11

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1821395	78	ATG ...	MPP ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1993990	42	TTG ...	LWP ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, HFF, MDA-MB-231
1731941	66	CTG ...	LMP ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
1821393	114	ATG ...	MLA ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1821389	60	ATG ...	MED ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1731937	51	CTG ...	LWC ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
483683	75	TTG ...	LAP ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative sORF Upstream	BJ, guo_2014, HEK293, HEK293T, HeLa, HFF, RPE-1
1821399	126	CTG ...	LEG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1821397	117	TTG ...	LGA ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
1821387	48	CTG ...	LQE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1441874	111	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative sORF Upstream	HeLa
1441872	105	CTG ...	LRF ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative sORF Upstream	HeLa
1821391	66	TTG ...	LPM ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1731939	63	ATG ...	MPP ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231

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