Transcript 4794 | MetamORF

Transcript

ID CARD

MetamORF ID

4794

ENST00000540887

Name

STIP1-210

Strand

Biotype

protein_coding

Start-end positions

64200252-64204143

CDS Start-stop positions

-64203680

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

HGNC:11387

Aliases

ENSG00000168439,
HGNC:11387, HOP, NCBI:10963,
OFF:STIP1, STI1, STIP1

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4793	69	GTG ...	VTQ ...	Ribo-seq	GTG	weak	26	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
908930	69	TTA ...	LKN ...	Ribo-seq	TTA	weak	1	sORFs_org_Human	sORF	Jurkat
908928	63	GGC ...	GAV ...	Ribo-seq	GGC	strong	1	sORFs_org_Human	sORF	Jurkat
8649	129	ATG ...	MYP ...	Ribo-seq	ATG		30	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908916	66	CAC ...	HQT ...	Ribo-seq	CAC		4	sORFs_org_Human	sORF	HEK293, HeLa, Jurkat, THP-1
407929	72	GGA ...	GSD ...	Ribo-seq	GGA	moderate	2	sORFs_org_Human	sORF	HCT116, Jurkat
908923	66	GAT ...	DEG ...	Ribo-seq	GAT	strong	2	sORFs_org_Human	sORF	HEK293, Jurkat
4796	33	CTG ...	LMD ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	sORF	BJ, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, loayza_puch_2016
407933	60	CCT ...	PVI ...	Ribo-seq	CCT	strong	2	sORFs_org_Human	sORF	HCT116, HEK293
286998	72	CTG ...	LYD ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, MM1S, U2OS
3200576	45	TGG ...	WNR ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	sORF	HEK293
4791	30	ATG ...	MYP ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	HeLa
3200574	39	TGT ...	CVP ...	Ribo-seq	TGT	strong	1	sORFs_org_Human	sORF	HEK293
908918	45	GCT ...	AGT ...	Ribo-seq	GCT		2	sORFs_org_Human	sORF	HEK293, Jurkat
3200570	75	GCT ...	AGS ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	sORF	HEK293
482525	72	CTG ...	LLH ...	Ribo-seq	CTG		10	sORFs_org_Human	sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MM1S
908932	45	AAG ...	KIQ ...	Ribo-seq	AAG	weak	2	sORFs_org_Human	sORF	HEK293, Jurkat
407931	36	ACA ...	TPK ...	Ribo-seq	ACA	moderate	4	sORFs_org_Human	sORF	HCT116, HEK293, Jurkat

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