Transcript 4739 | MetamORF

Transcript

ID CARD

MetamORF ID

4739

ENST00000540501

Name

STIP1-208

Strand

Biotype

processed_transcript

Start-end positions

64186303-64195811

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

HGNC:11387

Aliases

ENSG00000168439,
HGNC:11387, HOP, NCBI:10963,
OFF:STIP1, STI1, STIP1

Chr 11

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4749	207	CTG ...	LDP ...	Ribo-seq	CTG		23	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S
4765	111	CTG ...	LYQ ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4769	45	CTG ...	LIE ...	Ribo-seq	CTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4745	141	ATG ...	MMP ...	Ribo-seq	ATG	weak	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908900	39	CAA ...	QGH ...	Ribo-seq	CAA	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
1821704	42	TTG ...	LDR ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HeLa, hES
908892	90	ACC ...	TLS ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
407907	219	GAA ...	EAI ...	Ribo-seq	GAA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
4753	186	CTG ...	LYS ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MM1S
4738	285	CTG ...	LKE ...	Ribo-seq	CTG		31	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
4755	69	CTG ...	LLP ...	Ribo-seq	CTG	moderate	26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908886	84	TGT ...	CTA ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
4761	30	ATG ...	MRM ...	Ribo-seq	ATG	weak	26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4763	36	TTG ...	LKK ...	Ribo-seq	TTG	moderate	23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4747	138	ATG ...	MPY ...	Ribo-seq	ATG	moderate	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407901	270	AAC ...	NKA ...	Ribo-seq	AAC		2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
1206091	51	GTG ...	VIP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	ncRNA sORF	HAP1, MDA-MB-231
3200551	33	GGA ...	GER ...	Ribo-seq	GGA	strong	1	sORFs_org_Human	ncRNA sORF	HEK293
407913	165	GCC ...	AYA ...	Ribo-seq	GCC		2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
4741	261	CTG ...	LSV ...	Ribo-seq	CTG		29	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
4759	60	ATG ...	MPR ...	Ribo-seq	ATG	weak	26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908896	57	TGG ...	WRV ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
908894	78	TGC ...	CLI ...	Ribo-seq	TGC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
407909	102	ATC ...	IPT ...	Ribo-seq	ATC	weak	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
908898	84	AGG ...	RTR ...	Ribo-seq	AGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
4757	66	CTG ...	LPM ...	Ribo-seq	CTG	weak	26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407920	129	GAG ...	EDG ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	HCT116
4743	255	GTG ...	VGN ...	Ribo-seq	GTG		29	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
407905	129	AGT ...	SAT ...	Ribo-seq	AGT	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
407918	39	AGA ...	RRL ...	Ribo-seq	AGA	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
407903	147	ACA ...	TSM ...	Ribo-seq	ACA	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
4751	189	GTG ...	VLY ...	Ribo-seq	GTG		18	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MM1S
908888	75	ACC ...	TVL ...	Ribo-seq	ACC	strong	3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
407911	96	ACA ...	TTT ...	Ribo-seq	ACA	weak	4	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
908902	72	CTA ...	LLS ...	Ribo-seq	CTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
4767	99	TTG ...	LES ...	Ribo-seq	TTG		34	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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