Transcript 4674 | MetamORF

Transcript

ID CARD

MetamORF ID

4674

ENST00000356000

Name

RTN3-205

Strand

Biotype

protein_coding

Start-end positions

63681450-63759891

CDS Start-stop positions

63681637-63758201

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

HGNC:10469

Aliases

ASYIP,
ENSG00000133318, HAP, HGNC:10469,
NCBI:10313, NSPL2, NSPLII,
OFF:RTN3, RTN3, RTN3-A1

Chr 11

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
916475	249	TCT ...	SDF ...	Ribo-seq	TCT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
908789	45	GGC ...	GCL ...	Ribo-seq	GGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
908762	36	GTC ...	VCR ...	Ribo-seq	GTC	weak	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
938017	48	CTG ...	LPR ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, MDA-MB-231
1206037	132	CTG ...	LSE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative sORF Upstream	HAP1, HEK293, HeLa, MM1S
407868	195	AAT ...	NKY ...	Ribo-seq	AAT	weak	1	sORFs_org_Human	Downstream Overlapping sORF	HCT116
1821655	48	CTG ...	LSQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative sORF Upstream	HeLa
1301620	144	GGC ...	GGA ...	Ribo-seq	GGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
908774	195	CGG ...	RPL ...	Ribo-seq	CGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
908782	87	CGA ...	RAV ...	Ribo-seq	CGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4680	36	ATG ...	MLV ...	Ribo-seq	ATG	weak	18	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, THP-1, U2OS
1821662	63	TTG ...	LEV ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
908770	186	TAT ...	YLF ...	Ribo-seq	TAT		4	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa, Jurkat, THP-1
908780	165	CGT ...	RPS ...	Ribo-seq	CGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1317347	156	CTG ...	LRS ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative sORF Upstream	HEK293, HeLa, MM1S
407866	210	TCT ...	SDF ...	Ribo-seq	TCT		2	sORFs_org_Human	InCDS Overlapping sORF	HCT116, Jurkat
908764	129	TCG ...	SES ...	Ribo-seq	TCG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
1821668	120	CTG ...	LRG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
908793	192	AAG ...	KYM ...	Ribo-seq	AAG	moderate	1	sORFs_org_Human	Downstream Overlapping sORF	Jurkat
4682	33	TTG ...	LVL ...	Ribo-seq	TTG	strong	17	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, THP-1, U2OS
908772	159	CGC ...	RSR ...	Ribo-seq	CGC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
407864	33	TGT ...	CPR ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	sORF Upstream	HCT116
1821672	39	GTG ...	VVS ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
4676	30	CTG ...	LPW ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, U2OS
938029	54	TTG ...	LAS ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, guo_2014, HEK293, HeLa, hES
635321	240	TTG ...	LSE ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, Brain, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
908787	48	AGC ...	SLP ...	Ribo-seq	AGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
941340	240	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	Brain
1821670	99	GTG ...	VAV ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
908776	126	CAC ...	HSV ...	Ribo-seq	CAC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
1821664	36	CTG ...	LIK ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
908791	33	CAT ...	HRP ...	Ribo-seq	CAT	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
1821666	126	GTG ...	VGL ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
4673	33	ATG ...	MLP ...	Ribo-seq	ATG	weak	23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
4684	30	GTG ...	VLF ...	Ribo-seq	GTG	weak	13	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, MM1S
908768	219	TTA ...	LFY ...	Ribo-seq	TTA		4	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa, Jurkat, THP-1
938027	66	TTG ...	LIT ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293
908784	78	CGC ...	RAR ...	Ribo-seq	CGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
938019	51	CTG ...	LYR ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, hES
8605	51	CTG ...	LYR ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, HeLa, hES
908778	171	CCT ...	PRR ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4678	33	GTG ...	VAD ...	Ribo-seq	GTG	moderate	21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2616409	36	AGA ...	RPS ...	Ribo-seq	AGA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
908766	87	CGA ...	RAS ...	Ribo-seq	CGA	strong	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat

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