Transcript 4607 | MetamORF

Transcript

ID CARD

MetamORF ID

4607

ENST00000278856

Name

WDR74-201

Strand

Biotype

protein_coding

Start-end positions

62832912-62839661

CDS Start-stop positions

62832952-62839570

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

HGNC:25529

Aliases

ENSG00000133316,
FLJ10439, HGNC:25529, NCBI:54663,
Nsa1, OFF:WDR74, WDR74

Chr 11

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
908629	63	CTG ...	LWL ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Jurkat
8554	45	ATG ...	MTR ...	Ribo-seq	ATG		11	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, RPE-1
908631	72	ACT ...	TSL ...	Ribo-seq	ACT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1825437	36	TTG ...	LTF ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1130936	30	TTG ...	LSP ...	Ribo-seq	TTG		8	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S
908647	180	ATG ...	MAY ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4606	36	ATG ...	MTR ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MM1S, RPE-1
294541	54	ATG ...	MGS ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
4613	33	ATG ...	MCG ...	Ribo-seq	ATG	moderate	20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1
1094802	141	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
529329	99	ATG ...	MTG ...	Ribo-seq	ATG		11	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
2316223	36	GTG ...	VGC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
4611	66	GTG ...	VWI ...	Ribo-seq	GTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MM1S, RPE-1
1130939	75	CTG ...	LGC ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
908645	105	TCA ...	SET ...	Ribo-seq	TCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
908649	126	CGA ...	RGW ...	Ribo-seq	CGA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2316225	42	GTG ...	VCV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
908637	39	CAC ...	HRS ...	Ribo-seq	CAC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
8556	66	CTG ...	LGF ...	Ribo-seq	CTG		11	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, RPE-1
4609	57	CTG ...	LGF ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MM1S, RPE-1
908651	144	GGT ...	GEA ...	Ribo-seq	GGT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
908643	42	CAT ...	HHM ...	Ribo-seq	CAT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2316221	42	ATG ...	MSP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
482452	66	TTG ...	LSW ...	Ribo-seq	TTG	moderate	14	sORFs_org_Human	Overlapping sORF Upstream	HAP1, HEK293, HEK293T, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1
286780	36	ATG ...	MCG ...	Ribo-seq	ATG	weak	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HeLa, LCL, MDA-MB-231, RPE-1
482450	54	CTG ...	LLL ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1
1205945	33	CTG ...	LRN ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1
482446	48	CTG ...	LHA ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1
1094806	177	CTG ...	LRN ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
3016807	159	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, MM1S
1726068	93	GTG ...	VPP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293
3016802	30	TTG ...	LPQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MM1S
1989153	129	CTG ...	LAG ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
482448	51	CTG ...	LLH ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1
8558	75	GTG ...	VWI ...	Ribo-seq	GTG		9	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, RPE-1
1726070	132	CTG ...	LSE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
294543	69	TTG ...	LWE ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, LCL
908633	78	GCC ...	AST ...	Ribo-seq	GCC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
908639	120	CTT ...	LAG ...	Ribo-seq	CTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat

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