Transcript 4600 | MetamORF

Transcript

ID CARD

MetamORF ID

4600

ENST00000373609

Name

TXLNA-201

Strand

Biotype

protein_coding

Start-end positions

32180065-32198285

CDS Start-stop positions

32180346-32195195

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:30685

Aliases

DKFZp451J0118,
ENSG00000084652, HGNC:30685, NCBI:200081,
OFF:TXLNA, TXLNA

Chr 1

ORFs

69 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
247459	63	CTG ...	LLC ...	Ribo-seq	CTG		20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
247482	57	TTG ...	LRW ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
288179	93	ATG ...	MGH ...	Ribo-seq	ATG	strong	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1824748	51	GTG ...	VPS ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
288177	126	GTG ...	VWT ...	Ribo-seq	GTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
182521	48	CTG ...	LRR ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
904694	36	CTC ...	LQA ...	Ribo-seq	CTC	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
904868	48	CAA ...	QEG ...	Ribo-seq	CAA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
904460	42	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
904834	42	AGA ...	RSC ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
884365	141	TGC ...	CAV ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
288190	39	ATG ...	MWQ ...	Ribo-seq	ATG	weak	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1824750	33	GTG ...	VSV ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1824741	51	GTG ...	VPS ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
288186	72	CTG ...	LNP ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
288171	48	TTG ...	LFL ...	Ribo-seq	TTG	weak	15	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4671	33	ATG ...	MPS ...	Ribo-seq	ATG	weak	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, U2OS
636416	30	CTG ...	LEN ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative sORF Upstream	BJ, RPE-1, THP-1
4656	30	TTG ...	LSS ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, THP-1, U2OS
1824756	60	TTG ...	LLF ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
247464	42	CTG ...	LNC ...	Ribo-seq	CTG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1824738	57	GTG ...	VFV ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
87686	108	TTG ...	LSS ...	Ribo-seq	TTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
904646	30	GGT ...	GAR ...	Ribo-seq	GGT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
904668	33	GGT ...	GDL ...	Ribo-seq	GGT	strong	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
288165	69	GTG ...	VGI ...	Ribo-seq	GTG	strong	9	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, hES, LCL, MM1S, RPE-1, THP-1
247478	96	TTG ...	LPY ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, LCL, MDA-MB-231, MM1S, U2OS
1511703	129	TTG ...	LAP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative sORF Upstream	BJ, RPE-1
87684	84	GTG ...	VSC ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, hES, HFF, MDA-MB-231
1824746	48	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
904654	93	TGC ...	CAV ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
247480	75	TTG ...	LRS ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, hES, HFF, LCL, MDA-MB-231, MM1S, U2OS
4615	93	ATG ...	MTF ...	Ribo-seq	ATG	weak	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
288184	81	GTG ...	VSR ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4643	63	ATG ...	MSA ...	Ribo-seq	ATG	moderate	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
288175	33	CTG ...	LGP ...	Ribo-seq	CTG	strong	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1824764	42	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
87680	135	GTG ...	VST ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, hES, MDA-MB-231, RPE-1
288173	96	CTG ...	LPN ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, LCL, MDA-MB-231, RPE-1
533315	30	GTG ...	VGE ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, hES, MDA-MB-231, MM1S, RPE-1, U2OS
4602	51	TTG ...	LRA ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, hES, MDA-MB-231, RPE-1, THP-1, U2OS
1824754	93	CTG ...	LRG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1824758	57	TTG ...	LFV ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
904780	60	GGA ...	GER ...	Ribo-seq	GGA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
884370	123	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1511777	45	GTG ...	VCS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, HFF
1824760	72	TTG ...	LFS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
904644	129	AAA ...	KSR ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
288188	60	ATG ...	MQR ...	Ribo-seq	ATG	moderate	21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
87682	99	TTG ...	LRA ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, hES, HFF, MDA-MB-231, U2OS
904561	48	GAG ...	EYP ...	Ribo-seq	GAG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
247461	45	ATG ...	MLN ...	Ribo-seq	ATG		18	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
4604	36	GTG ...	VSC ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, hES, MDA-MB-231, RPE-1, THP-1, U2OS
288167	30	CTG ...	LRR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, hES, LCL, RPE-1, THP-1
1824743	36	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
4599	87	GTG ...	VST ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
288277	75	TTG ...	LRS ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, HFF, LCL, MDA-MB-231, MM1S, U2OS
288169	54	CTG ...	LCL ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
884363	177	AAA ...	KSR ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
904692	69	AGC ...	STM ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1824727	42	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
102614	30	GTG ...	VPG ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
904465	81	GCA ...	ARR ...	Ribo-seq	GCA	weak	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
904853	36	TGT ...	CAG ...	Ribo-seq	TGT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
904914	144	AAG ...	KRL ...	Ribo-seq	AAG	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
1824762	63	ATG ...	MRL ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
904666	75	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
288275	96	TTG ...	LPY ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, LCL, MDA-MB-231, MM1S, U2OS
904496	69	TCC ...	SSS ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat

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