Transcript 4554 | MetamORF

Transcript

ID CARD

MetamORF ID

4554

ENST00000532345

Name

TMEM179B-203

Strand

Biotype

retained_intron

Start-end positions

62789060-62790110

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

HGNC:33744

Aliases

ENSG00000185475,
HGNC:33744, NCBI:374395, OFF:TMEM179B,
TMEM179B

Chr 11

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4583	108	GTG ...	VQW ...	Ribo-seq	GTG	moderate	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908578	45	TCT ...	SET ...	Ribo-seq	TCT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
407817	87	ACC ...	TPY ...	Ribo-seq	ACC	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
937979	33	TTG ...	LGH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Intronic sORF	BJ, Brain
286714	102	CTG ...	LKP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
4556	135	CTG ...	LAL ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
407812	117	TCA ...	SAP ...	Ribo-seq	TCA	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
1297491	108	CTG ...	LAS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293T, RPE-1
407814	78	TTT ...	FCS ...	Ribo-seq	TTT	weak	1	sORFs_org_Human	Intronic sORF	HCT116
286707	42	GTG ...	VCG ...	Ribo-seq	GTG	moderate	14	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
286694	99	CTG ...	LTI ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	BJ, LCL, U2OS
4553	150	CTG ...	LNG ...	Ribo-seq	CTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
286700	63	TTG ...	LGE ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
4573	144	TTG ...	LVL ...	Ribo-seq	TTG	strong	24	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
286709	138	GTG ...	VWS ...	Ribo-seq	GTG	moderate	11	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
286680	69	CTG ...	LPP ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	Intronic sORF	HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4581	120	GTG ...	VLQ ...	Ribo-seq	GTG	weak	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
286716	69	GTG ...	VTL ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
286718	63	CTG ...	LSG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
286696	90	CTG ...	LSL ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	BJ, LCL, MM1S, RPE-1, U2OS
4562	54	CTG ...	LLL ...	Ribo-seq	CTG	weak	26	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4575	138	TTG ...	LWC ...	Ribo-seq	TTG	moderate	27	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HCT116, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4558	105	CTG ...	LCY ...	Ribo-seq	CTG	weak	20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
286692	111	ATG ...	MVP ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	LCL
4579	123	TTG ...	LVL ...	Ribo-seq	TTG	strong	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4571	150	GTG ...	VNL ...	Ribo-seq	GTG	weak	24	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4564	48	TTG ...	LLF ...	Ribo-seq	TTG	weak	27	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1297489	117	CTG ...	LGP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293T, RPE-1
286705	45	GTG ...	VVC ...	Ribo-seq	GTG	strong	15	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
286678	111	GTG ...	VLL ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	Intronic sORF	HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
908570	108	TCC ...	SLC ...	Ribo-seq	TCC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
529274	57	ATG ...	MAP ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Intronic sORF	HEK293, HEK293T, MDA-MB-231, RPE-1, U2OS
4577	129	GTG ...	VVL ...	Ribo-seq	GTG	moderate	27	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4560	72	TTG ...	LAL ...	Ribo-seq	TTG	moderate	22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4585	72	CTG ...	LER ...	Ribo-seq	CTG	moderate	24	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
286698	84	CTG ...	LSP ...	Ribo-seq	CTG		8	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, LCL, MM1S, RPE-1, U2OS
286720	51	CTG ...	LRQ ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, LCL, MDA-MB-231, RPE-1, U2OS
529309	42	ATG ...	MLS ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Intronic sORF	BJ, Blood, RPE-1, U2OS

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