Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

4525

ID

ENST00000526368

Name

POLR2G-204

Strand

+

Biotype

retained_intron

Start-end positions

62762754-62766707

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

TTG ...

Gene

ID

HGNC:9194

Aliases

ENSG00000168002,
HGNC:9194, hRPB19, hsRPB7,
NCBI:5436, OFF:POLR2G, POLR2G,
RPB7


Chr 11

ORFs

31 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

908548 42

CAG ...

QKL ...

Ribo-seq
CAG 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
4533 63

TTG ...

LFS ...

Ribo-seq
TTG 20 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
4539 36

TTG ...

LGP ...

Ribo-seq
TTG 18 sORFs_org_Human
    Intronic
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1
407806 54

GGC ...

GHL ...

Ribo-seq
GGC 2 sORFs_org_Human
    Intronic
    sORF
HCT116, Jurkat
908559 33

TAT ...

YWL ...

Ribo-seq
TAT 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
908552 36

CCA ...

PTH ...

Ribo-seq
CCA 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
4524 39

TTG ...

LLS ...

Ribo-seq
TTG weak 21 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1, U2OS
908541 132

GGC ...

GRG ...

Ribo-seq
GGC 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
4545 36

TTG ...

LWG ...

Ribo-seq
TTG 28 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1, THP-1, U2OS
908535 180

ATT ...

IAV ...

Ribo-seq
ATT 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
102445 54

TTG ...

LDS ...

Ribo-seq
TTG 22 sORFs_org_Human
    Intronic
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, Jurkat,
LCL, loayza_puch_2016, MDA-MB-231,
MM1S, RPE-1, THP-1
482428 39

TTG ...

LQV ...

Ribo-seq
TTG weak 12 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, RPE-1, THP-1,
U2OS
4535 63

GTG ...

VDA ...

Ribo-seq
GTG 9 sORFs_org_Human
    Intronic
    sORF
Brain, HEK293, HeLa,
hES
407808 42

GAT ...

DPL ...

Ribo-seq
GAT weak 1 sORFs_org_Human
    Intronic
    sORF
HCT116
4529 144

GTG ...

VIQ ...

Ribo-seq
GTG 24 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Brain,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
MM1S, RPE-1, THP-1,
U2OS
4537 30

ATG ...

MLL ...

Ribo-seq
ATG 27 sORFs_org_Human
    Intronic
    sORF
Blood, Brain, HAP1,
HEK293, HeLa, hES,
HFF, LCL, loayza_puch_2016,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
1137280 57

GTG ...

VDK ...

Ribo-seq
GTG 2 sORFs_org_Human
    Intronic
    sORF
HEK293, HeLa
407810 78

TTA ...

LKI ...

Ribo-seq
TTA 1 sORFs_org_Human
    Intronic
    sORF
HCT116
407804 114

TAT ...

YPV ...

Ribo-seq
TAT 2 sORFs_org_Human
    Intronic
    sORF
HCT116, Jurkat
407802 192

TAT ...

YGF ...

Ribo-seq
TAT 3 sORFs_org_Human
    Intronic
    sORF
HCT116, HEK293, Jurkat
908557 30

GGA ...

GPV ...

Ribo-seq
GGA 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
1297480 48

TTG ...

LLH ...

Ribo-seq
TTG 1 sORFs_org_Human
    Intronic
    sORF
HEK293T
4543 105

GTG ...

VIQ ...

Ribo-seq
GTG 26 sORFs_org_Human
    Intronic
    sORF
Brain, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HeLa,
hES, HFF, Jurkat,
LCL, loayza_puch_2016, RPE-1,
THP-1, U2OS
4527 36

CTG ...

LSP ...

Ribo-seq
CTG weak 20 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
MDA-MB-231, RPE-1, THP-1,
U2OS
908555 39

AGA ...

RLW ...

Ribo-seq
AGA 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
4531 93

TTG ...

LSF ...

Ribo-seq
TTG 18 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1
286651 69

GTG ...

VGT ...

Ribo-seq
GTG 5 sORFs_org_Human
    Intronic
    sORF
HEK293, HeLa, LCL
908544 108

GTT ...

VKY ...

Ribo-seq
GTT 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
908537 138

CAG ...

QPG ...

Ribo-seq
CAG 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
2956951 90

GTG ...

VHG ...

Ribo-seq
GTG 2 sORFs_org_Human
    Intronic
    sORF
HeLa, hES
4541 48

TTG ...

LIL ...

Ribo-seq
TTG 25 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, THP-1

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS