Transcript 4213 | MetamORF

Transcript

ID CARD

MetamORF ID

4213

ENST00000543510

Name

TMEM258-207

Strand

Biotype

protein_coding

Start-end positions

61789131-61792802

CDS Start-stop positions

61789795-61790590

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

HGNC:1164

Aliases

C11orf10,
ENSG00000134825, HGNC:1164, Kud,
Kuduk, NCBI:746, OFF:TMEM258,
TMEM258

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
294264	78	TTG ...	LES ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative Downstream Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S
294267	165	CTG ...	LIS ...	Ribo-seq	CTG		26	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2315250	45	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative sORF Upstream	MDA-MB-231
294269	174	TTG ...	LIA ...	Ribo-seq	TTG		25	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
1317002	78	GTG ...	VLG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	sORF Upstream	HEK293, HeLa
294271	192	CTG ...	LKS ...	Ribo-seq	CTG		23	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
407664	273	CCT ...	PHS ...	Ribo-seq	CCT		2	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116, Jurkat
8387	93	TTG ...	LAC ...	Ribo-seq	TTG		32	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
907986	72	ACT ...	TLH ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
4212	33	GTG ...	VIS ...	Ribo-seq	GTG	weak	28	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
907992	30	CGA ...	RGH ...	Ribo-seq	CGA	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
286111	36	CTG ...	LGW ...	Ribo-seq	CTG		21	sORFs_org_Human	Alternative Downstream Overlapping sORF	Blood, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1137112	39	CTG ...	LPT ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative sORF Upstream	HEK293, MDA-MB-231
907990	96	GCT ...	APH ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
1441845	51	TTG ...	LAS ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Downstream Overlapping sORF	Blood, HeLa, MM1S
407666	90	CAT ...	HLL ...	Ribo-seq	CAT		4	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116, HeLa, Jurkat, THP-1
409576	66	TCC ...	SCC ...	Ribo-seq	TCC		4	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116, HeLa, Jurkat, THP-1
409578	96	CCT ...	PHS ...	Ribo-seq	CCT		2	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116, Jurkat

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