Transcript 407514

Transcript

ID CARD

MetamORF ID

407514

ENST00000389919

Name

ZFP91-CNTF-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

58579172-58624566

CDS Start-stop positions

58579282-58622780

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:33441

Aliases

ENSG00000255073,
HGNC:33441, NCBI:386607, OFF:ZFP91-CNTF,
ZFP91-CNTF

Chr 11

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3307165	24	ATG ...	MHR ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
907363	288	CCG ...	PRA ...	Ribo-seq	CCG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
528361	198	CTG ...	LRG ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, hES, MDA-MB-231, RPE-1, U2OS
3307168	78	ATG ...	MML ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
907381	36	ATG ...	MIQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2327576	192	ATG ...	MKL ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
2314639	168	TTG ...	LLH ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231, RPE-1
907375	60	GTC ...	VQD ...	Ribo-seq	GTC	weak	1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
907367	48	AGA ...	RRR ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
3113958	210	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	hES
907369	33	CCT ...	PPS ...	Ribo-seq	CCT	weak	1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
2314627	51	CTG ...	LRR ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231, RPE-1
528357	30	CTG ...	LQG ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231, RPE-1, U2OS
2314641	165	CTG ...	LHL ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231, RPE-1
285487	69	ATG ...	MVR ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
533861	96	ATG ...	MSP ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
407513	126	GGT ...	GGG ...	Ribo-seq	GGT	strong	1	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HCT116
2314632	171	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
907373	105	ATA ...	IQR ...	Ribo-seq	ATA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
1821057	72	ATG ...	MMQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1505916	150	CTG ...	LCP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, MDA-MB-231
2314637	192	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231, RPE-1
407516	102	GCC ...	AGG ...	Ribo-seq	GCC	strong	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116
528359	201	GTG ...	VLR ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, hES, MDA-MB-231, RPE-1, U2OS
907365	42	CTC ...	LQF ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
2314675	57	ATG ...	MQA ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
528363	144	GTG ...	VSR ...	Ribo-seq	GTG		8	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Brain, HEK293, hES, MDA-MB-231, RPE-1, U2OS
2314645	108	GTG ...	VIQ ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231, RPE-1
907371	162	CAT ...	HLD ...	Ribo-seq	CAT		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
2314643	123	CTG ...	LFL ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HeLa, hES, MDA-MB-231, RPE-1

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