Transcript 3783 | MetamORF

Transcript

ID CARD

MetamORF ID

3783

ENST00000536171

Name

TMEM109-202

Strand

Biotype

protein_coding

Start-end positions

60919678-60923376

CDS Start-stop positions

60919694-60922165

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

HGNC:28771

Aliases

ENSG00000110108,
HGNC:28771, MGC5508, NCBI:79073,
OFF:TMEM109, TMEM109

Chr 11

ORFs

58 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
907673	54	TGC ...	CSV ...	Ribo-seq	TGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
916253	69	TTC ...	FCG ...	Ribo-seq	TTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
907651	120	CCA ...	PDR ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
907681	147	GCT ...	AVG ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3782	129	ATG ...	MGK ...	Ribo-seq	ATG	strong	24	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
907683	57	TGT ...	CLC ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3801	117	CTG ...	LAA ...	Ribo-seq	CTG	moderate	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
916258	54	TGC ...	CSV ...	Ribo-seq	TGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
8271	90	GTG ...	VGH ...	Ribo-seq	GTG		24	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
907667	75	AGC ...	SHF ...	Ribo-seq	AGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
528460	168	CTG ...	LAP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, hES, MM1S, U2OS
3795	33	TTG ...	LLC ...	Ribo-seq	TTG	weak	22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3805	33	TTG ...	LSS ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
907640	84	TCC ...	SST ...	Ribo-seq	TCC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3789	36	TTG ...	LGQ ...	Ribo-seq	TTG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3016526	84	CTG ...	LDW ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MM1S
1821174	42	CTG ...	LPF ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
8269	117	TTG ...	LGQ ...	Ribo-seq	TTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
916242	132	CAC ...	HWM ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916262	30	GCT ...	AAE ...	Ribo-seq	GCT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
3799	144	GTG ...	VGS ...	Ribo-seq	GTG	strong	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407573	69	GTC ...	VDL ...	Ribo-seq	GTC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
907671	39	CCT ...	PSL ...	Ribo-seq	CCT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
907635	147	CTC ...	LQH ...	Ribo-seq	CTC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
907645	36	ACC ...	TTR ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
907642	75	CAG ...	QHW ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3797	117	CTG ...	LAR ...	Ribo-seq	CTG	strong	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
3793	45	CTG ...	LWP ...	Ribo-seq	CTG	weak	22	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
907661	99	CCA ...	PSV ...	Ribo-seq	CCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
916249	81	CTC ...	LIS ...	Ribo-seq	CTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
3785	63	CTG ...	LCE ...	Ribo-seq	CTG		26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
8265	144	CTG ...	LCE ...	Ribo-seq	CTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
285857	48	TTG ...	LHH ...	Ribo-seq	TTG	moderate	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
907638	105	CAT ...	HSD ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3803	63	GTG ...	VGP ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
907656	51	CAC ...	HWM ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
907654	105	TGT ...	CAR ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916260	39	CGC ...	RRT ...	Ribo-seq	CGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
907679	177	GCT ...	AQP ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8267	126	ATG ...	MPG ...	Ribo-seq	ATG		21	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
907669	69	TTC ...	FCG ...	Ribo-seq	TTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
3307408	732	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
916251	75	AGC ...	SHF ...	Ribo-seq	AGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
3791	90	GTG ...	VGH ...	Ribo-seq	GTG		24	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1821183	33	ATG ...	MHF ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
907647	30	AGG ...	RPT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916245	105	TTC ...	FVP ...	Ribo-seq	TTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
907649	126	CTT ...	LDP ...	Ribo-seq	CTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
907675	39	CGC ...	RRT ...	Ribo-seq	CGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
907677	30	GCT ...	AAE ...	Ribo-seq	GCT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
907663	72	TGT ...	CCG ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3787	45	ATG ...	MPG ...	Ribo-seq	ATG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
907659	105	TTC ...	FVP ...	Ribo-seq	TTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
409553	150	GTC ...	VDL ...	Ribo-seq	GTC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
528462	153	CTG ...	LGP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, hES, MM1S, U2OS
285880	42	CTG ...	LTL ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
916247	99	CCA ...	PSV ...	Ribo-seq	CCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
907665	81	CTC ...	LIS ...	Ribo-seq	CTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat

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