Transcript 3686 | MetamORF

Transcript

ID CARD

MetamORF ID

3686

ENST00000471219

Name

PEF1-203

Strand

Biotype

processed_transcript

Start-end positions

31633275-31635472

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTA ...

Genome browsers

UCSC

Gene

HGNC:30009

Aliases

ENSG00000162517,
HGNC:30009, NCBI:553115, OFF:PEF1,
PEF1, PEF1A

Chr 1

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3748	264	ATG ...	MVV ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293
903168	159	GAG ...	EAY ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
903269	237	GGA ...	GGQ ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
3701	207	ATG ...	MDH ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293
903200	39	GGT ...	GAQ ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
903233	120	GAT ...	DVP ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
3716	225	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
3752	291	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
3736	243	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
3694	192	GTG ...	VEG ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
903244	153	GGA ...	GGP ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
3688	129	ATG ...	MAV ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293
3690	150	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
903252	153	TGG ...	WWR ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
3703	219	CTG ...	LEG ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
903172	180	GCC ...	APP ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
903263	216	TGG ...	WAT ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
3746	258	GTG ...	VGY ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
3692	180	ATG ...	MDT ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293
3685	123	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
3721	234	ATG ...	MGV ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293
3744	246	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
903255	207	GGT ...	GGG ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
3696	195	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
903236	171	CCA ...	PIL ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
3750	276	GTG ...	VEG ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293
903223	108	ACT ...	TPG ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	Jurkat
3723	240	GTG ...	VVM ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HEK293

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