Transcript 3673 | MetamORF

Transcript

ID CARD

MetamORF ID

3673

ENST00000528903

Name

OSBP-203

Strand

Biotype

retained_intron

Start-end positions

59593480-59600592

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:8503

Aliases

ENSG00000110048,
HGNC:8503, NCBI:5007, OFF:OSBP,
OSBP, OSBP1

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
907464	153	TAC ...	YKP ...	Ribo-seq	TAC		1	sORFs_org_Human	Intronic sORF	Jurkat
907466	45	TAC ...	YHT ...	Ribo-seq	TAC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
407524	39	GGA ...	GPI ...	Ribo-seq	GGA	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
3675	222	CTG ...	LLD ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Intronic sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
907462	48	CAA ...	QFM ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
285718	30	ATG ...	MGT ...	Ribo-seq	ATG	strong	7	sORFs_org_Human	Intronic sORF	Blood, HeLa, hES, LCL, MDA-MB-231, MM1S
1725250	75	CTG ...	LDI ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, HEK293, MDA-MB-231, RPE-1
285726	60	ATG ...	MSP ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, LCL, MDA-MB-231, MM1S
907460	120	ATC ...	IMK ...	Ribo-seq	ATC		1	sORFs_org_Human	Intronic sORF	Jurkat
3677	237	CTG ...	LEY ...	Ribo-seq	CTG	strong	15	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
1725263	60	CTG ...	LLC ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, HEK293, MDA-MB-231, RPE-1
907447	87	GTC ...	VQK ...	Ribo-seq	GTC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
3679	267	TTG ...	LSM ...	Ribo-seq	TTG	weak	16	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
1136935	84	CTG ...	LDR ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Intronic sORF	hES
907455	201	TGT ...	CEN ...	Ribo-seq	TGT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
907457	216	GAC ...	DRA ...	Ribo-seq	GAC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
285724	30	CTG ...	LKI ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
285728	36	TTG ...	LEK ...	Ribo-seq	TTG		5	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
285730	42	ATG ...	MEH ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
907453	129	CGC ...	RTS ...	Ribo-seq	CGC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1725256	66	CTG ...	LSS ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Intronic sORF	Blood, HEK293, MDA-MB-231, RPE-1
907449	30	TCA ...	SSP ...	Ribo-seq	TCA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
285720	30	TTG ...	LGR ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, hES, LCL, MDA-MB-231, MM1S, RPE-1
407526	243	GAA ...	EDL ...	Ribo-seq	GAA	strong	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
285722	105	CTG ...	LLG ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Intronic sORF	Brain, HeLa, hES, LCL, MM1S
1725259	99	TTG ...	LQL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Intronic sORF	Blood, MDA-MB-231
3672	156	GTG ...	VSS ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, RPE-1, THP-1
907451	111	AAC ...	NPL ...	Ribo-seq	AAC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1725261	102	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Intronic sORF	Blood, MDA-MB-231

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