Transcript 3663 | MetamORF

Transcript

ID CARD

MetamORF ID

3663

ENST00000525357

Name

OSBP-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

59576833-59600856

CDS Start-stop positions

59581456-

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

HGNC:8503

Aliases

ENSG00000110048,
HGNC:8503, NCBI:5007, OFF:OSBP,
OSBP, OSBP1

Chr 11

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3200347	105	TGG ...	WAP ...	Ribo-seq	TGG		1	sORFs_org_Human	NMD sORF	HEK293
2314869	42	ATG ...	MFQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	NMD sORF	MDA-MB-231
102033	186	GTG ...	VTG ...	Ribo-seq	GTG		15	sORFs_org_Human	NMD sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
285716	123	TTG ...	LYF ...	Ribo-seq	TTG		2	sORFs_org_Human	NMD sORF	Blood, LCL
3675	222	CTG ...	LLD ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	HEK293
1136935	84	CTG ...	LDR ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	HEK293
907445	138	ACC ...	TIH ...	Ribo-seq	ACC		1	sORFs_org_Human	NMD sORF	Jurkat
1505949	60	ATG ...	MLG ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	NMD sORF	BJ, HeLa, MDA-MB-231
102030	138	CTG ...	LGT ...	Ribo-seq	CTG		16	sORFs_org_Human	NMD sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
2314879	78	ATG ...	MQL ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	NMD sORF	MDA-MB-231
2314875	36	CTG ...	LYT ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	NMD sORF	HeLa, MDA-MB-231
1136944	192	CTG ...	LEE ...	Ribo-seq	CTG		3	sORFs_org_Human	NMD sORF	HEK293, HeLa, hES
3672	156	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Human	NMD sORF	HEK293
3677	237	CTG ...	LEY ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	HEK293
1505943	42	CTG ...	LPP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	NMD sORF	BJ, HeLa, MDA-MB-231
1725248	123	TTG ...	LDT ...	Ribo-seq	TTG		1	sORFs_org_Human	NMD sORF	Blood
1136933	99	GTG ...	VNH ...	Ribo-seq	GTG		9	sORFs_org_Human	NMD sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1505945	48	GTG ...	VAL ...	Ribo-seq	GTG	strong	3	sORFs_org_Human	NMD sORF	BJ, HeLa, MDA-MB-231
2314877	72	CTG ...	LGT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	NMD sORF	MDA-MB-231
3662	174	GTG ...	VTD ...	Ribo-seq	GTG		16	sORFs_org_Human	NMD sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
407528	174	GAA ...	EKR ...	Ribo-seq	GAA		1	sORFs_org_Human	NMD sORF	HCT116
1505947	45	TTG ...	LGK ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	NMD sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
907443	75	GTA ...	VHN ...	Ribo-seq	GTA		1	sORFs_org_Human	NMD sORF	Jurkat
285722	105	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	HEK293
407522	132	ACG ...	TWD ...	Ribo-seq	ACG		1	sORFs_org_Human	NMD sORF	HCT116
1725272	39	GTG ...	VEP ...	Ribo-seq	GTG		2	sORFs_org_Human	NMD sORF	Blood, HeLa
907441	45	GAG ...	EES ...	Ribo-seq	GAG		1	sORFs_org_Human	NMD sORF	Jurkat

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