Transcript 3610 | MetamORF

Transcript

ID CARD

MetamORF ID

3610

ENST00000527599

Name

CTNND1-217

Strand

Biotype

retained_intron

Start-end positions

57801995-57803990

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:2515

Aliases

CTNND,
CTNND1, ENSG00000198561, HGNC:2515,
KIAA0384, NCBI:1500, OFF:CTNND1,
p120, p120cas, p120ctn

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2683460	99	ATG ...	MVC ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	RPE-1
3612	192	GTG ...	VGL ...	Ribo-seq	GTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
3634	108	GTG ...	VII ...	Ribo-seq	GTG	moderate	22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
3632	120	TTG ...	LTD ...	Ribo-seq	TTG	moderate	22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
3616	162	GTG ...	VHL ...	Ribo-seq	GTG		20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
407494	87	ATC ...	IPK ...	Ribo-seq	ATC	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
2683458	102	GTG ...	VMV ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	RPE-1
3113936	93	CTG ...	LMN ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	hES
3624	57	TTG ...	LLR ...	Ribo-seq	TTG		18	sORFs_org_Human	Intronic sORF	Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
285373	57	GTG ...	VEL ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Intronic sORF	HAP1, HeLa, hES, LCL, MDA-MB-231, RPE-1
2956406	84	TTG ...	LCD ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	hES
3620	75	GTG ...	VPA ...	Ribo-seq	GTG		16	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
407497	75	CCT ...	PNE ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
285370	66	TTG ...	LEP ...	Ribo-seq	TTG	strong	8	sORFs_org_Human	Intronic sORF	Blood, HAP1, HCT116, HeLa, hES, LCL, MDA-MB-231
3622	63	GTG ...	VRL ...	Ribo-seq	GTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
3609	195	CTG ...	LVG ...	Ribo-seq	CTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
3630	129	CTG ...	LHA ...	Ribo-seq	CTG	moderate	22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
3614	186	TTG ...	LLD ...	Ribo-seq	TTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
407499	69	GAA ...	EDC ...	Ribo-seq	GAA	strong	1	sORFs_org_Human	Intronic sORF	HCT116
528353	33	GTG ...	VLT ...	Ribo-seq	GTG	weak	16	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
285381	48	ATG ...	MTQ ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, hES, LCL, MDA-MB-231
3628	141	GTG ...	VDH ...	Ribo-seq	GTG	strong	22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
3200338	213	CTC ...	LKG ...	Ribo-seq	CTC		1	sORFs_org_Human	Intronic sORF	HEK293
407501	63	TGT ...	CKP ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
3618	36	CTG ...	LWS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
3626	183	CTG ...	LWN ...	Ribo-seq	CTG	moderate	22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
285375	33	TTG ...	LDV ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Intronic sORF	HAP1, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
528351	39	GTG ...	VGI ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Intronic sORF	BJ, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
3113938	90	ATG ...	MNC ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	hES

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