Transcript 3597 | MetamORF

Transcript

ID CARD

MetamORF ID

3597

ENST00000531074

Name

AP001931.1-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

57742163-57793243

CDS Start-stop positions

-57742217

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

AP001931.1

Aliases

AP001931.1

Chr 11

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2804822	33	GTG ...	VLN ...	Ribo-seq	GTG		2	sORFs_org_Human	NMD sORF	hES, RPE-1
1205437	36	TTG ...	LAK ...	Ribo-seq	TTG		8	sORFs_org_Human	NMD sORF	Blood, HAP1, HEK293, hES, MDA-MB-231, RPE-1
1505837	177	CTG ...	LGA ...	Ribo-seq	CTG		2	sORFs_org_Human	NMD sORF	BJ, RPE-1
2683436	60	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	RPE-1
1297266	51	CTG ...	LLP ...	Ribo-seq	CTG		6	sORFs_org_Human	NMD sORF	BJ, HEK293T, hES, RPE-1
528323	54	CTG ...	LLD ...	Ribo-seq	CTG		12	sORFs_org_Human	NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
1505835	207	TTG ...	LSP ...	Ribo-seq	TTG		2	sORFs_org_Human	NMD sORF	BJ, RPE-1
407482	273	TTG ...	LDL ...	Ribo-seq	TTG		6	sORFs_org_Human	NMD sORF	BJ, HCT116, HEK293, HeLa, RPE-1, THP-1
407488	195	GTG ...	VAK ...	Ribo-seq	GTG		5	sORFs_org_Human	NMD sORF	HCT116, HEK293, HeLa, RPE-1, THP-1
1505848	102	CTG ...	LPC ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	NMD sORF	BJ, MDA-MB-231, RPE-1
1988469	30	ATG ...	MYV ...	Ribo-seq	ATG		4	sORFs_org_Human	NMD sORF	HeLa, hES, RPE-1
2804820	42	CTG ...	LFS ...	Ribo-seq	CTG		2	sORFs_org_Human	NMD sORF	hES, RPE-1
528325	51	CTG ...	LDL ...	Ribo-seq	CTG		12	sORFs_org_Human	NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
407484	147	TCT ...	SEG ...	Ribo-seq	TCT		3	sORFs_org_Human	NMD sORF	HCT116, HeLa, THP-1
407490	78	CGA ...	RKI ...	Ribo-seq	CGA		1	sORFs_org_Human	NMD sORF	HCT116
3596	102	GTG ...	VIH ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	NMD sORF	HEK293, hES, MDA-MB-231, RPE-1
285356	30	GTG ...	VEE ...	Ribo-seq	GTG	strong	21	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
528327	45	TTG ...	LSF ...	Ribo-seq	TTG		12	sORFs_org_Human	NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
3599	75	CTG ...	LRR ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	NMD sORF	HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
907295	36	AAT ...	NSL ...	Ribo-seq	AAT		1	sORFs_org_Human	NMD sORF	Jurkat
2956387	39	TTG ...	LKK ...	Ribo-seq	TTG		1	sORFs_org_Human	NMD sORF	hES
407492	72	AAT ...	NVC ...	Ribo-seq	AAT		1	sORFs_org_Human	NMD sORF	HCT116
1309957	60	GCT ...	AGF ...	Ribo-seq	GCT		3	sORFs_org_Human	NMD sORF	HEK293, HeLa, THP-1
285354	33	GTG ...	VVE ...	Ribo-seq	GTG	strong	20	sORFs_org_Human	NMD sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
285352	30	CTG ...	LSL ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	NMD sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1316817	51	ATG ...	MPT ...	Ribo-seq	ATG		7	sORFs_org_Human	NMD sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231
1821031	30	ATG ...	MRQ ...	Ribo-seq	ATG		1	sORFs_org_Human	NMD sORF	HeLa
1505839	276	GTG ...	VLD ...	Ribo-seq	GTG		2	sORFs_org_Human	NMD sORF	BJ, RPE-1
407486	102	GAT ...	DPE ...	Ribo-seq	GAT		4	sORFs_org_Human	NMD sORF	HCT116, HEK293, HeLa, THP-1
907297	75	TGT ...	CRR ...	Ribo-seq	TGT		1	sORFs_org_Human	NMD sORF	Jurkat
1505842	267	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Human	NMD sORF	BJ, RPE-1

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