Transcript 3565 | MetamORF

Transcript

ID CARD

MetamORF ID

3565

ENST00000302731

Name

CLP1-201

Strand

Biotype

protein_coding

Start-end positions

57657763-57661864

CDS Start-stop positions

57659477-57661436

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

HGNC:16999

Aliases

CLP1,
ENSG00000172409, hClp1, HEAB,
HGNC:16999, NCBI:10978, OFF:CLP1

Chr 11

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
285279	129	GTG ...	VAV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
1725128	114	CTG ...	LFL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
285281	123	GTG ...	VSL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
285270	54	ATG ...	MLV ...	Ribo-seq	ATG	weak	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, Jurkat, LCL, MDA-MB-231
2327493	72	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	MDA-MB-231, RPE-1
2314404	33	CTG ...	LFT ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, MDA-MB-231
1725118	51	CTG ...	LVP ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
285299	42	CTG ...	LPR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, hES, LCL, MDA-MB-231
1725122	198	GTG ...	VSP ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
285301	102	GTG ...	VWT ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2314392	123	GTG ...	VWW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2314372	117	CTG ...	LRW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1316781	42	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative sORF Upstream	HEK293, HeLa, RPE-1
1205406	39	CTG ...	LSL ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231
285276	36	CTG ...	LFS ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
285274	48	GTG ...	VPR ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
2314359	36	ATG ...	MMT ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
2314394	81	ATG ...	MSV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
907230	51	AGT ...	STC ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
285297	51	GTG ...	VLA ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, LCL, MDA-MB-231
2314388	147	CTG ...	LCC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2314401	30	ATG ...	MPS ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
409539	102	TTT ...	FGL ...	Ribo-seq	TTT		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, HEK293, Jurkat
1205408	30	CTG ...	LGE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231
285268	57	TTG ...	LML ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
285303	75	CTG ...	LFC ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2314386	156	TTG ...	LYA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1205404	72	TTG ...	LGH ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, MDA-MB-231
285293	39	TTG ...	LLF ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2314361	33	ATG ...	MTR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
285266	33	CTG ...	LAW ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, RPE-1
907225	72	TTT ...	FGL ...	Ribo-seq	TTT		2	sORFs_org_Human	Alternative sORF Upstream	HEK293, Jurkat
285291	45	ATG ...	MSL ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2314396	69	GTG ...	VSI ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
285283	108	GTG ...	VAG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2314363	42	TTG ...	LRW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
285285	90	CTG ...	LVT ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2314390	129	CTG ...	LGV ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
285289	54	TTG ...	LRW ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
1725126	54	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1505793	30	CTG ...	LFC ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
285295	36	TTG ...	LFW ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
3564	39	TTG ...	LAW ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231, U2OS
1725124	60	CTG ...	LWL ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
2314398	57	ATG ...	MDS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
907227	33	CCT ...	PVG ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
285287	69	ATG ...	MQP ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL
2314374	105	ATG ...	MSP ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231

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